CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35009	Soybean	cytosol	30.95	87.68
KRH35010	Soybean	nucleus	35.81	86.96
Solyc07g008860.2.1	Tomato	cytoskeleton, cytosol, nucleus	68.29	67.25
PGSC0003DMT400073944	Potato	cytoskeleton, cytosol, nucleus	68.03	67.0
VIT_18s0164g00020.t01	Wine grape	nucleus	66.24	66.24
VIT_11s0016g02220.t01	Wine grape	cytosol	66.5	66.16
GSMUA_Achr11P...	Banana	cytosol	55.24	62.61
KRH37298	Soybean	cytosol	59.59	61.48
CDX72834	Canola	cytosol	61.64	60.55
AT1G71840.1	Thale cress	nucleus	62.66	60.2
Bra016111.1-P	Field mustard	cytosol	61.13	59.9
CDX68298	Canola	cytosol	58.82	59.13
Bra003910.1-P	Field mustard	cytosol	56.52	58.47
CDY36678	Canola	cytosol	58.06	58.35
CDX96351	Canola	cytosol	59.34	58.15
Os03t0685600-01	Rice	cytosol	56.78	56.35
TraesCS1A01G358200.1	Wheat	cytoskeleton, cytosol, nucleus	31.2	55.45
KXG26924	Sorghum	cytoskeleton, cytosol, nucleus	55.5	54.52
TraesCS2D01G129200.1	Wheat	cytoskeleton, cytosol, nucleus	54.22	53.54
TraesCS2A01G126700.2	Wheat	cytoskeleton, cytosol, nucleus	54.22	53.4
TraesCS1D01G363000.1	Wheat	cytosol	52.69	52.28
TraesCS1B01G374800.1	Wheat	cytosol	52.43	52.03
HORVU3Hr1G013230.4	Barley	cytosol	52.43	51.25
Zm00001d041945_P003	Maize	cytosol	54.48	50.12
TraesCS2B01G148600.2	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	53.2	42.89
Zm00001d011779_P005	Maize	cytosol	53.71	42.86
HORVU2Hr1G022250.4	Barley	mitochondrion	53.45	42.14
KRH71413	Soybean	nucleus	21.74	26.56
KRH32024	Soybean	cytosol	21.48	26.33
KRH50874	Soybean	nucleus	20.72	24.62
KRH02239	Soybean	nucleus	20.46	24.17
KRH59511	Soybean	cytosol, nucleus	17.65	23.0
KRG94875	Soybean	nucleus	19.95	22.61
HORVU5Hr1G075920.16	Barley	nucleus	42.46	22.59
KRH06660	Soybean	nucleus	19.69	22.32
KRH43376	Soybean	nucleus	17.39	21.18
KRH21524	Soybean	cytosol	11.76	20.44
KRH08668	Soybean	nucleus	22.25	18.12
KRH70275	Soybean	nucleus	21.48	17.5
KRH03886	Soybean	nucleus	18.93	14.4
KRH57171	Soybean	cytosol	18.67	14.2
KRH55267	Soybean	cytosol	5.12	14.08
KRH12069	Soybean	nucleus	15.86	13.03
KRH37088	Soybean	nucleus	15.86	13.0
KRH13395	Soybean	nucleus	17.9	9.8
KRH20750	Soybean	nucleus	17.9	9.78
KRG93160	Soybean	cytosol	16.62	8.56
KRH56498	Soybean	cytosol	16.11	8.3
KRH20528	Soybean	cytosol	15.6	7.84
KRH10790	Soybean	cytosol	16.37	7.76
KRH49977	Soybean	cytosol	12.28	7.01
KRH21526	Soybean	cytosol, peroxisome	4.6	3.01

Protein Annotations

EntrezGene:100790414	Gene3D:2.130.10.10	MapMan:35.1	EMBL:ACUP02012706	InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_20G173100
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0008150	GO:GO:0030687
GO:GO:0042273	GO:GO:0051082	UniProt:I1NH84	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
EnsemblPlants:KRG91764	ProteinID:KRG91764	ProteinID:KRG91764.1	ProteinID:KRG91765.1	PFAM:PF00400	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19857	PANTHER:PTHR19857:SF8	InterPro:Quinoprotein_ADH-like_supfam
SMART:SM00320	SUPFAM:SSF50998	UniParc:UPI000233D9AC	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:41060453..41065677

Molecular Weight (calculated)

42095.3 Da

IEP (calculated)

4.181

GRAVY (calculated)

-0.275

Length

391 amino acids

Sequence
(BLAST)

001: MSAPPHHDDD DDNEEVFLDE SDIIHEVAMD NEDLPDADDD SELLEEDEDG DFVHKFTAHT GELYSVACSP TDADLVATAG GDDRGFLWKI GQGDWAFELQ
101: GHEESVSSLA FSYDGQCLAS GSLDGIIKVW DVSGNLEGKK FEGPGGGIEW LRWHPRGHIL LAGSEDFSIW MWNTDNAALL NTFIGHGDSV TCGDFTPDGK
201: IICTGSDDAT LRIWNPKTGE STHVVRGHPY HTEGLTCLTI NSTSTLALSG SKDGSVHIVN ITTGRVVDNN ALASHSDSIE CVGFAPSGSW AAVGGMDKKL
301: IIWDIEHLLP RGTCEHEDGV TCLAWLGASY VASGCVDGKV RLWDSRSGEC VKTLKGHSDA IQSLSVSSNR NYLVSASVDG TACAFEVENF R

Best Arabidopsis Sequence Match ( AT1G71840.1 )
(BLAST)

001: MSNNTNNTEM NNLAMEEEDE GEIFLGESDV LREIDVDEED LPEADDDDMD DDGEQFDEND DSVHTFTGHK GELYALACSP TDATLVATGG GDDKAFLWKI
101: GNGDWAAELP GHKDSVSCLA FSYDGQLLAS GGLDGVVQIF DASSGTLKCV LDGPGAGIEW VRWHPRGHIV LAGSEDCSLW MWNADKEAYL NMFSGHNLNV
201: TCGDFTPDGK LICTGSDDAS LIVWNPKTCE SIHIVKGHPY HTEGLTCLDI NSNSSLAISG SKDGSVHIVN IVTGKVVSSL NSHTDSVECV KFSPSSATIP
301: LAATGGMDKK LIIWDLQHST PRFICEHEEG VTSLTWIGTS KYLATGCANG TVSIWDSLLG NCVHTYHGHQ DAVQAISVST NTDFIVSVSV DNTARVFESS
401: EFQNKVT

Arabidopsis Description

Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q8RXQ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.