CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0776g00020.t01	Wine grape	cytosol, mitochondrion, nucleus	89.78	38.77
KRH10790	Soybean	cytosol	98.22	26.79
KRH20528	Soybean	cytosol	84.89	24.55
KRG93160	Soybean	cytosol	77.33	22.92
KRH56498	Soybean	cytosol	76.44	22.66
TraesCS3D01G313800.1	Wheat	cytosol	77.78	21.14
TraesCS3A01G317500.1	Wheat	cytosol	77.78	21.06
TraesCS3B01G349000.2	Wheat	cytosol	77.33	20.94
OQU87670	Sorghum	cytosol	77.33	20.91
Os01t0780400-02	Rice	cytosol	77.78	20.88
Zm00001d012620_P025	Maize	cytosol	76.44	20.62
Solyc02g078800.2.1	Tomato	extracellular	85.78	18.76
GSMUA_Achr1P08830_001	Banana	cytosol	80.44	18.7
HORVU3Hr1G076760.7	Barley	cytosol, mitochondrion, nucleus	77.78	18.13
KRH49977	Soybean	cytosol	53.33	17.52
KRH55267	Soybean	cytosol	10.22	16.2
KRG94875	Soybean	nucleus	24.0	15.65
KRH06660	Soybean	nucleus	24.0	15.65
KRH71413	Soybean	nucleus	21.33	15.0
KRH32024	Soybean	cytosol	20.44	14.42
KRH50874	Soybean	nucleus	20.0	13.68
KRH02239	Soybean	nucleus	20.0	13.6
KRH12069	Soybean	nucleus	26.67	12.61
KRH37088	Soybean	nucleus	26.67	12.58
KRH59511	Soybean	cytosol, nucleus	16.0	12.0
KRH70275	Soybean	nucleus	25.33	11.88
KRG91764	Soybean	cytoskeleton, cytosol, nucleus	20.44	11.76
KRH08668	Soybean	nucleus	24.89	11.67
KRH43376	Soybean	nucleus	16.0	11.21
KRH57171	Soybean	cytosol	24.44	10.7
KRH03886	Soybean	nucleus	24.0	10.51
KRH37298	Soybean	cytosol	15.56	9.23
VIT_00s1397g00010.t01	Wine grape	cytosol	12.0	7.96
KRH13395	Soybean	nucleus	24.44	7.7
KRH20750	Soybean	nucleus	24.44	7.68
KRH35009	Soybean	cytosol	4.0	6.52
KRH35010	Soybean	nucleus	3.56	4.97
KRH21526	Soybean	cytosol, peroxisome	0.0	0.0
PGSC0003DMT400057760	Potato	cytosol	0.0	0.0

Protein Annotations

MapMan:13.4.4.2.2	Gene3D:2.130.10.10	UniProt:A0A0R0H5X5	EMBL:ACUP02008358	InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_13G2443002
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
EnsemblPlants:KRH21524	ProteinID:KRH21524	ProteinID:KRH21524.1	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19845	PANTHER:PTHR19845:SF5	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI0006EDFA4F	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf

Description

hypothetical protein

Coordinates

chr13:+:35358811..35363592

Molecular Weight (calculated)

24846.8 Da

IEP (calculated)

8.046

GRAVY (calculated)

-0.105

Length

225 amino acids

Sequence
(BLAST)

001: MAKRGYKIQE FVAHSASVNC LNIGKKACRL FITGGDDHKV NLWTIGKPTP ITSLSGHTSP VESVAFDSGE VLVLGGASTG VIKLWDLEEA KMVRTVAGHR
101: SNCTAVEFHP FGEFFASGSM DTNLKIWDIR KKGCIHTYKG HSQGISIIKF TPDGRWVVSG GFDNVVKVWD LTAGKLLHDF KFHEGHIRSI DFHPLEFLLA
201: TGSADRTVKF WDLETFELIG SARPE

Best Arabidopsis Sequence Match ( AT1G11160.1 )
(BLAST)

0001: MAKRGYKLQE FVAHSGNVNC LSIGKKTSRL LLTGGDDYKV NLWSIGKTTS PMSLCGHTSP VDSVAFNSEE VLVLAGASSG VIKLWDLEES KMVRAFTGHR
0101: SNCSAVEFHP FGEFLASGSS DTNLRVWDTR KKGCIQTYKG HTRGISTIEF SPDGRWVVSG GLDNVVKVWD LTAGKLLHEF KCHEGPIRSL DFHPLEFLLA
0201: TGSADRTVKF WDLETFELIG TTRPEATGVR AIAFHPDGQT LFCGLDDGLK VYSWEPVICR DGVDMGWSTL GDFCINEGKF IGCSYYRNSV GIWVSDISEL
0301: EPYGAVSEDK NECMVKRFSV LNDQSERMGS GPRGSVSPDY ETREIKNIYV DSTGGNLNVA QNPGSLKATL PLESGKVATM VSEKQNAAYF GPAGDKYSST
0401: SRDSDSGEES SYSERESIPF SRTKSGMLLR PAHVRKTLAK FEESKQSAVV QSATRKKSGL AVEEEPQTQN AFLSEQNASK PFDAEDSIIK GITNKFEKAL
0501: SSEPPTDEAN RMFLKPPRIH RSSNSKYNDT RRAMSADPAT FGKGGMENSG DVEDIPSKTE RVLSREKPGD EQKNTEYPSG SRELNPVKIV EGVNVVSGRT
0601: RSLVEKFERG EKTTHTEGAS TTIEQNNNAV QEDPRKTSRQ TGETPVISTR RARSTPARVM PIVLNRDSNV TSDEPPLTQP ARTSSFPVMP VILNQASNVT
0701: YDEPSVALTQ ESRTSHARIL PVTFNQATNI TSEEASVTLR RQRRNSAARV RPVLLSQATS HECPVTSVRP LRTSPARVMP TKLNQSVNMT SDTSHIASMH
0801: RVSPTQMLAT PTVIDQVADM TLDETHATQI QPACDNMPQK EEPNISDRED DSDITENLML THNEFLSTLQ SRLTKLQIVR HFWERSDVKG AIGALRKLTD
0901: QSVQADVISI LTEKIEILTL DMFSQLVPVL TSLLGSRTER PVNVSLDMLL KLVAVFGTVI RSTVSAPRIV GVDLHANERL EICQICSAGL HKIQRILPVL
1001: ARRGGLITRK AQELNLVLQE P

Arabidopsis Description

Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/TrEMBL;Acc:F4I7E1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.