CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32024	Soybean	cytosol	92.81	93.1
VIT_07s0151g00960.t01	Wine grape	cytosol	75.31	76.51
PGSC0003DMT400049837	Potato	cytosol, plastid	72.19	73.33
Solyc09g065290.2.1	Tomato	cytosol, plastid	71.88	73.02
GSMUA_Achr7P01850_001	Banana	plastid	51.25	70.09
Bra018529.1-P	Field mustard	cytosol	68.75	67.48
CDX97287	Canola	cytosol	68.75	67.48
CDX91316	Canola	cytosol	68.44	67.18
AT4G02730.1	Thale cress	cytosol	68.44	65.77
CDX70436	Canola	plastid	33.12	63.47
KXG36525	Sorghum	plastid	60.62	58.97
Zm00001d021866_P001	Maize	plastid	60.0	58.54
TraesCS2A01G196900.1	Wheat	plastid	60.31	58.31
Zm00001d021868_P001	Maize	plastid	59.69	58.23
TraesCS2B01G224500.1	Wheat	plastid	60.31	58.13
Os07t0572000-01	Rice	plastid	61.25	57.99
KRH50874	Soybean	nucleus	57.19	55.62
KRH02239	Soybean	nucleus	56.88	54.98
TraesCS2D01G204900.1	Wheat	cytosol, plastid	60.62	53.74
HORVU2Hr1G041020.2	Barley	cytosol, plastid	60.31	53.61
KRH59511	Soybean	cytosol, nucleus	27.19	29.0
KRH43376	Soybean	nucleus	26.88	26.79
KRG94875	Soybean	nucleus	26.88	24.93
KRH06660	Soybean	nucleus	26.88	24.93
KRG91764	Soybean	cytoskeleton, cytosol, nucleus	26.56	21.74
KRH21524	Soybean	cytosol	15.0	21.33
KRH08668	Soybean	nucleus	31.88	21.25
KRH70275	Soybean	nucleus	31.56	21.04
KRH35009	Soybean	cytosol	8.12	18.84
KRH37298	Soybean	cytosol	21.25	17.94
KRH55267	Soybean	cytosol	7.81	17.61
KRH12069	Soybean	nucleus	22.81	15.34
KRH57171	Soybean	cytosol	24.06	14.98
KRH03886	Soybean	nucleus	24.06	14.98
KRH37088	Soybean	nucleus	22.19	14.88
KRH35010	Soybean	nucleus	6.56	13.04
KRH13395	Soybean	nucleus	23.75	10.64
KRH20750	Soybean	nucleus	23.75	10.61
KRH56498	Soybean	cytosol	23.12	9.75
KRG93160	Soybean	cytosol	23.12	9.75
KRH20528	Soybean	cytosol	21.25	8.74
KRH10790	Soybean	cytosol	20.94	8.12
KRH49977	Soybean	cytosol	16.56	7.74
KRH21526	Soybean	cytosol, peroxisome	5.94	3.17

Protein Annotations

EntrezGene:100794027	MapMan:12.3.3.2.3	Gene3D:2.130.10.10	EMBL:ACUP02000898	InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_02G146800
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1JF99	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	EnsemblPlants:KRH71413	ProteinID:KRH71413	ProteinID:KRH71413.1	PFAM:PF00400	PIRSF:PIRSF002394
PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22847	PANTHER:PTHR22847:SF602
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002336D04	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:15145781..15149119

Molecular Weight (calculated)

34979.3 Da

IEP (calculated)

7.951

GRAVY (calculated)

-0.175

Length

320 amino acids

Sequence
(BLAST)

001: MATSTTSSGG GGTGTQTFKP YRHLKTLKDH ENAVSCVKFS NDGTLLASAS LDKTLIIWSS ATLTLCHRLV GHSEGISDLA WSSDSHYICS ASDDHTLRIW
101: DATGGDCVKI LRGHDDVVFC VNFNPQSSYI VSGSFDETIK VWDVKTGKCV HTIKGHTMPV TSVHYNRDGT LIISASHDGS CKIWDTRTGN LLKTLIEDKA
201: PAVSFAKFSP NGKFILAATL NDTLKLWNYG SGKFLKIYSG HVNRVYCITS TFSVTNGRYI VSGSEDRCVY IWDLQAKNMI QKLEGHTDTV ISVTCHPTEN
301: KIASAGLAGD RTVRVWVQDS

Best Arabidopsis Sequence Match ( AT4G02730.1 )
(BLAST)

001: MPSGGNGTSN GVANANSTGN AGTSGNVPIY KPYRHLKTLE GHTAAISCVK FSNDGNLLAS ASVDKTMILW SATNYSLIHR YEGHSSGISD LAWSSDSHYT
101: CSASDDCTLR IWDARSPYEC LKVLRGHTNF VFCVNFNPPS NLIVSGSFDE TIRIWEVKTG KCVRMIKAHS MPISSVHFNR DGSLIVSASH DGSCKIWDAK
201: EGTCLKTLID DKSPAVSFAK FSPNGKFILV ATLDSTLKLS NYATGKFLKV YTGHTNKVFC ITSAFSVTNG KYIVSGSEDN CVYLWDLQAR NILQRLEGHT
301: DAVISVSCHP VQNEISSSGN HLDKTIRIWK QDA

Arabidopsis Description

WDR5BCOMPASS-like H3K4 histone methylase component WDR5B [Source:UniProtKB/Swiss-Prot;Acc:Q9SY00]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.