Factsheet for Solyc09g065290.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400049837	Potato	cytosol, plastid	97.14	97.14
VIT_07s0151g00960.t01	Wine grape	cytosol	76.83	76.83
KRH71413	Soybean	nucleus	73.02	71.88
KRH32024	Soybean	cytosol	72.7	71.79
CDX91316	Canola	cytosol	70.16	67.79
GSMUA_Achr7P01850_001	Banana	plastid	50.16	67.52
Bra018529.1-P	Field mustard	cytosol	69.84	67.48
CDX97287	Canola	cytosol	69.84	67.48
AT4G02730.1	Thale cress	cytosol	70.48	66.67
Zm00001d021866_P001	Maize	plastid	66.98	64.33
KXG36525	Sorghum	plastid	66.98	64.13
Zm00001d021868_P001	Maize	plastid	66.67	64.02
TraesCS2A01G196900.1	Wheat	plastid	66.67	63.44
TraesCS2B01G224500.1	Wheat	plastid	66.35	62.95
Os07t0572000-01	Rice	plastid	65.4	60.95
CDX70436	Canola	plastid	31.11	58.68
Solyc02g091790.2.1	Tomato	cytosol, nucleus	58.41	58.6
HORVU2Hr1G041020.2	Barley	cytosol, plastid	66.03	57.78
TraesCS2D01G204900.1	Wheat	cytosol, plastid	66.03	57.62
Solyc11g005550.1.1	Tomato	cytosol	28.89	30.43
Solyc03g059100.1.1	Tomato	nucleus	29.52	28.53
Solyc09g010620.1.1	Tomato	cytosol	12.38	23.93
Solyc07g008860.2.1	Tomato	cytoskeleton, cytosol, nucleus	26.67	21.16
Solyc03g112530.2.1	Tomato	nucleus	31.75	20.79
Solyc03g111740.2.1	Tomato	cytosol	23.81	15.56
Solyc01g094480.2.1	Tomato	nucleus	23.81	15.56
Solyc08g067040.2.1	Tomato	nucleus	24.13	9.95
Solyc02g021360.2.1	Tomato	cytosol	22.86	9.02
Solyc04g008720.2.1	Tomato	cytosol	22.22	8.64
Solyc02g078800.2.1	Tomato	extracellular	21.27	6.51

Protein Annotations

MapMan:12.3.3.2.3	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:K4CUF6	PFAM:PF00400	PIRSF:PIRSF002394
PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22847	PANTHER:PTHR22847:SF602
SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:Solyc09g065290.2	EnsemblPlants:Solyc09g065290.2.1	UniParc:UPI000276C51F	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

No Description!

Coordinates

chr9:+:63351939..63354351

Molecular Weight (calculated)

34846.3 Da

IEP (calculated)

8.480

GRAVY (calculated)

-0.173

Length

315 amino acids

Sequence
(BLAST)

001: MANNNNNQPT TPPYLPYRQR KVLTGHTRAV SCVKFANNGQ LFASASLDKT LIVWSTQTLT QLSRLVGHSE GVSDLSWSSD SSYICSASDD RTLRIWDART
101: AESVKTLRGH TGFVFCVNFN PQSNLIVSGS FDETFRVWDV KTGKPIHAIK AHSMPVTSVH FNKDGSLIVS GSHDGSCKIW DMASGACLKT LIDDKVPAVS
201: FAKFSPNGKF ILVATLDNTL KLWNYSTGKF IKSYAGHVNR VYCITSTFSV TNGKYIVSGS EDQCVYVWDL QGKNLLQKFE GHTDTVISVC CHPIENMILS
301: AGLDNDRTVR IWVQD

Best Arabidopsis Sequence Match ( AT4G02730.1 )
(BLAST)

001: MPSGGNGTSN GVANANSTGN AGTSGNVPIY KPYRHLKTLE GHTAAISCVK FSNDGNLLAS ASVDKTMILW SATNYSLIHR YEGHSSGISD LAWSSDSHYT
101: CSASDDCTLR IWDARSPYEC LKVLRGHTNF VFCVNFNPPS NLIVSGSFDE TIRIWEVKTG KCVRMIKAHS MPISSVHFNR DGSLIVSASH DGSCKIWDAK
201: EGTCLKTLID DKSPAVSFAK FSPNGKFILV ATLDSTLKLS NYATGKFLKV YTGHTNKVFC ITSAFSVTNG KYIVSGSEDN CVYLWDLQAR NILQRLEGHT
301: DAVISVSCHP VQNEISSSGN HLDKTIRIWK QDA

Arabidopsis Description

WDR5BCOMPASS-like H3K4 histone methylase component WDR5B [Source:UniProtKB/Swiss-Prot;Acc:Q9SY00]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.