Factsheet for Solyc03g111740.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039207	Potato	cytosol	95.23	90.18
VIT_17s0000g09750.t01	Wine grape	cytosol	74.27	69.11
KRH57171	Soybean	cytosol	73.03	68.48
GSMUA_Achr8P28660_001	Banana	cytosol	47.72	68.25
KRH03886	Soybean	nucleus	72.61	68.09
CDY05801	Canola	cytosol	69.5	66.73
AT5G50230.1	Thale cress	cytosol	69.71	66.01
GSMUA_Achr2P06000_001	Banana	cytosol	63.49	64.56
Bra037932.1-P	Field mustard	mitochondrion	69.29	58.09
CDY05802	Canola	mitochondrion	69.29	58.09
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	11.2	57.45
Zm00001d033994_P002	Maize	mitochondrion, nucleus	55.19	52.47
Os03t0746600-01	Rice	nucleus	54.77	51.66
HORVU5Hr1G094540.7	Barley	cytosol, mitochondrion, nucleus	51.45	48.16
TraesCS5D01G394200.1	Wheat	cytosol	51.04	47.67
KXG37566	Sorghum	plastid	55.6	46.61
Solyc11g005550.1.1	Tomato	cytosol	16.18	26.09
Solyc02g091790.2.1	Tomato	cytosol, nucleus	16.18	24.84
Solyc09g065290.2.1	Tomato	cytosol, plastid	15.56	23.81
Solyc03g059100.1.1	Tomato	nucleus	14.52	21.47
Solyc03g112530.2.1	Tomato	nucleus	19.29	19.33
Solyc07g008860.2.1	Tomato	cytoskeleton, cytosol, nucleus	14.52	17.63
Solyc09g010620.1.1	Tomato	cytosol	5.81	17.18
Solyc01g094480.2.1	Tomato	nucleus	14.32	14.32
Solyc08g067040.2.1	Tomato	nucleus	14.73	9.29
Solyc02g021360.2.1	Tomato	cytosol	14.11	8.52
Solyc04g008720.2.1	Tomato	cytosol	13.69	8.15
Solyc02g078800.2.1	Tomato	extracellular	15.15	7.09

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:Autophagy-rel_prot_16	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000045
GO:GO:0000421	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:K4BK36	PFAM:PF00400	PFAM:PF08614	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19878	PANTHER:PTHR19878:SF8	SMART:SM00320	SUPFAM:SSF50978	SignalP:SignalP-noTM
EnsemblPlantsGene:Solyc03g111740.2	EnsemblPlants:Solyc03g111740.2.1	UniParc:UPI00027690EC	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:	:

Description

Autophagy-related protein 16 [Source:Projected from Arabidopsis thaliana (AT5G50230) UniProtKB/Swiss-Prot;Acc:Q6NNP0]

Coordinates

chr3:-:62385430..62390827

Molecular Weight (calculated)

52967.6 Da

IEP (calculated)

6.023

GRAVY (calculated)

-0.230

Length

482 amino acids

Sequence
(BLAST)

001: MPLLWLHSIG LSFCSCGSEW KEKAENLEVE LQQCYKAQAR LSEQLVVEVA ESRASKSLLQ EKETLITDLQ NELNQARDEC SHLTELLAEK TKGLELLMAE
101: HQDLKAQLEA MTLRANNAEA ENKTLVDRWM LLKMQDAERL NEANALYGDM LDKVKAASIE KLARQQVDGV VRQSEDGAEF YVESSIPSTC KQRIPAHDGG
201: CASIVFEYNS SKLISGGQDR AIKMWDTTSG SLTNSLYGCL GSVLDLSVTH DNKFIIAASS SNNLYVWDAN SGRIRHTLTG HMDKVCAVDV SKFSSRHVVS
301: AAYDRTIKVW DLQKGYCNNT IIFHSNCNSL AFSMDALTIC SGHVDGNLRL WDVQTGKLLS EVAAHSQAVT SVSLSRNGNM ILTSGRDNLH NLFDIRTLEI
401: CGTFRSNANR VASNWSRSCI SADDGYVTAG SVDGSVHIWS VSNGKMVSTL KEHTSSVLCC SWSGLGNPLA TSDKSGTVCI WS

Best Arabidopsis Sequence Match ( AT5G50230.1 )
(BLAST)

001: MVQEEKAMEA INDALRALRK RHLLEEGAHA PAISALSKPL ISQGSEWKEK TEKLETELQQ CYKAQSRLSE QLVIEVAESR TSKAILQEKE LLINDLQKEL
101: TQRREDCTRL QEELEEKTKT VDVLIAENLE IRSQLEEMTS RVQKAETENK MLIDRWMLQK MQDAERLNEA NDLYEEMLAK LKANGLETLA RQQVDGIVRR
201: NEDGTDHFVE STIPSTCANR IHAHEGGCGS IVFEYNSGTL FTGGQDRAVK MWDTNSGTLI KSLYGSLGNI LDMAVTHDNK SVIAATSSNN LFVWDVSSGR
301: VRHTLTGHTD KVCAVDVSKF SSRHVVSAAY DRTIKLWDLH KGYCTNTVLF TSNCNAICLS IDGLTVFSGH MDGNLRLWDI QTGKLLSEVA GHSSAVTSVS
401: LSRNGNRILT SGRDNVHNVF DTRTLEICGT LRASGNRLAS NWSRSCISPD DDYVAAGSAD GSVHVWSLSK GNIVSILKEQ TSPILCCSWS GIGKPLASAD
501: KNGYVCTWT

Arabidopsis Description

ATG16Autophagy-related protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q6NNP0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.