Factsheet for Solyc03g112530.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400046634	Potato	cytosol	99.79	99.79
VIT_13s0064g00360.t01	Wine grape	nucleus	86.49	87.21
KRH08668	Soybean	nucleus	84.2	84.38
GSMUA_Achr3P29050_001	Banana	nucleus	83.58	84.1
KRH70275	Soybean	nucleus	83.78	83.96
CDX96156	Canola	cytosol	78.59	79.41
AT5G52820.1	Thale cress	cytosol	77.55	78.86
Bra022611.1-P	Field mustard	cytosol	77.75	78.57
CDY27046	Canola	cytosol	77.75	78.57
CDX84790	Canola	cytosol	77.55	78.36
TraesCS1A01G443600.1	Wheat	cytosol	77.13	78.11
TraesCS1B01G478100.1	Wheat	cytosol	76.92	77.73
TraesCS1D01G451700.1	Wheat	cytosol	76.51	77.47
EES18812	Sorghum	cytosol	76.92	77.24
Zm00001d039211_P006	Maize	cytosol	76.92	74.45
HORVU1Hr1G095080.1	Barley	cytosol, plastid	76.3	72.96
CDY50395	Canola	cytosol, extracellular, golgi, mitochondrion	48.02	72.41
Bra003111.1-P	Field mustard	nucleus	34.51	71.55
CDY52843	Canola	nucleus	34.3	71.12
CDY09645	Canola	cytosol	66.11	67.23
VIT_13s0064g00330.t01	Wine grape	extracellular	15.59	57.25
Solyc02g091790.2.1	Tomato	cytosol, nucleus	21.41	32.8
Solyc09g065290.2.1	Tomato	cytosol, plastid	20.79	31.75
Solyc03g059100.1.1	Tomato	nucleus	17.67	26.07
Solyc09g010620.1.1	Tomato	cytosol	7.48	22.09
Solyc11g005550.1.1	Tomato	cytosol	13.72	22.07
Solyc07g008860.2.1	Tomato	cytoskeleton, cytosol, nucleus	17.88	21.66
Solyc03g111740.2.1	Tomato	cytosol	19.33	19.29
Solyc01g094480.2.1	Tomato	nucleus	17.26	17.22
Solyc08g067040.2.1	Tomato	nucleus	17.26	10.86
Solyc02g021360.2.1	Tomato	cytosol	15.8	9.52
Solyc04g008720.2.1	Tomato	cytosol	15.59	9.26
Solyc02g078800.2.1	Tomato	extracellular	16.42	7.68
Os01t0531300-00	Rice	endoplasmic reticulum, extracellular	0.62	1.35

Protein Annotations

MapMan:17.1.2.2.1.12	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000027	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005737	GO:GO:0005840	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	InterPro:Gprotein_B
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:K4BKA6	InterPro:NLE	PFAM:PF00400
PFAM:PF08154	PRINTS:PR00319	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19848	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:Solyc03g112530.2	EnsemblPlants:Solyc03g112530.2.1	UniParc:UPI00027674CC
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

No Description!

Coordinates

chr3:-:62915620..62923392

Molecular Weight (calculated)

53130.2 Da

IEP (calculated)

8.167

GRAVY (calculated)

-0.295

Length

481 amino acids

Sequence
(BLAST)

001: MEVEVEAAAA AEREATNSVI CQLADPEGNP LGAALYLPEN ASPKELNQVV NKLLSNEEKL PYAFYISDEE LVVQLGSYLE KNKVSVEKVL TIVYQPQAVF
101: RIRPVTRCSA TIAGHTEAVL SVAFSPDGRQ LASGSGDTTV RLWDLNTQTP LFTCQGHRNW VLSVAWSPDG KHLVSGSKAG ELICWDLQTG KPLGNPLTGH
201: KKWITGISWE PVHLSAPCRR FVSASKDGDA RIWDVTTRKC LICLTGHTLA ITCVKWGGDG VIYTGSQDCT IKVWETTQGK LIRELKGHGH WVNSLALSTE
301: YVLRSGAFDH TNKHFASPEE MKKVALERYN KMRGNAPERL VSGSDDFTMF LWEPAVSKHP KTRMTGHQQL VNHVYFSPDG QWIASASFDK SVKLWNGTTG
401: KFVAAFRGHV GPVYQISWSA DSRLLLSGSK DSTLKVWDIR TKKLKQDLPG HADEVFAVDW SPDGEKVASG GKDRVLKLWM G

Best Arabidopsis Sequence Match ( AT5G52820.1 )
(BLAST)

001: MTMMDTDEGK TVMCLLTDPE GTHLGSAMYI PQKAGPLQLT QLVNRFLDNE EMLPYSFYVS DEELLVPVGT YLEKNKVSVE KVLTIVYQQQ AVFRIRPVNR
101: CSQTIAGHAE AVLCVSFSPD GKQLASGSGD TTVRLWDLYT ETPLFTCKGH KNWVLTVAWS PDGKHLVSGS KSGEICCWNP KKGELEGSPL TGHKKWITGI
201: SWEPVHLSSP CRRFVTSSKD GDARIWDITL KKSIICLSGH TLAVTCVKWG GDGIIYTGSQ DCTIKMWETT QGKLIRELKG HGHWINSLAL STEYVLRTGA
301: FDHTGRQYPP NEEKQKALER YNKTKGDSPE RLVSGSDDFT MFLWEPSVSK QPKKRLTGHQ QLVNHVYFSP DGKWIASASF DKSVRLWNGI TGQFVTVFRG
401: HVGPVYQVSW SADSRLLLSG SKDSTLKIWE IRTKKLKQDL PGHADEVFAV DWSPDGEKVV SGGKDRVLKL WKG

Arabidopsis Description

NLE1NLE [Source:UniProtKB/TrEMBL;Acc:A0A178UNZ3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.