Factsheet for Solyc03g059100.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 3
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400067694	Potato	cytosol	98.77	94.71
VIT_05s0094g00800.t01	Wine grape	cytosol	88.04	83.43
KRH06660	Soybean	nucleus	86.5	81.74
KRG94875	Soybean	nucleus	86.2	81.45
Bra003387.1-P	Field mustard	cytosol	83.44	80.95
AT2G43770.1	Thale cress	cytosol	84.97	80.76
Zm00001d046930_P001	Maize	cytosol, extracellular, plasma membrane	77.91	77.91
Zm00001d036709_P001	Maize	cytosol	77.3	77.3
CDX67810	Canola	cytosol	83.74	76.04
GSMUA_Achr3P04370_001	Banana	cytosol	74.85	75.78
Os06t0653800-01	Rice	nucleus	78.83	74.93
EER90141	Sorghum	plastid	78.53	74.64
TraesCS7B01G406900.1	Wheat	cytosol, plastid	77.91	73.41
TraesCS7A01G499900.1	Wheat	nucleus	77.61	73.12
HORVU7Hr1G111780.2	Barley	cytosol, plastid	77.3	72.83
TraesCS7D01G486800.1	Wheat	cytosol, plastid	77.3	72.83
Bra004783.1-P	Field mustard	cytosol, golgi	81.9	64.34
CDX79802	Canola	cytosol, golgi	81.9	64.34
CDY17912	Canola	cytosol, golgi	81.9	64.03
CDX98392	Canola	endoplasmic reticulum, extracellular	83.44	61.4
Solyc09g065290.2.1	Tomato	cytosol, plastid	28.53	29.52
Solyc02g091790.2.1	Tomato	cytosol, nucleus	27.91	28.98
Solyc11g005550.1.1	Tomato	cytosol	23.31	25.42
Solyc09g010620.1.1	Tomato	cytosol	11.96	23.93
Solyc07g008860.2.1	Tomato	cytoskeleton, cytosol, nucleus	25.46	20.91
Solyc03g112530.2.1	Tomato	nucleus	26.07	17.67
Solyc03g111740.2.1	Tomato	cytosol	21.47	14.52
Solyc01g094480.2.1	Tomato	nucleus	19.02	12.86
Solyc02g021360.2.1	Tomato	cytosol	22.09	9.02
Solyc08g067040.2.1	Tomato	nucleus	20.86	8.9
Solyc04g008720.2.1	Tomato	cytosol	19.94	8.02
Solyc02g078800.2.1	Tomato	extracellular	21.17	6.71

Protein Annotations

MapMan:16.4.1.4.3	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:K4BGV7	PFAM:PF00400	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44006	SMART:SM00320	SUPFAM:SSF50978
EnsemblPlantsGene:Solyc03g059100.1	EnsemblPlants:Solyc03g059100.1.1	UniParc:UPI0002768EB8	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:	:

Description

No Description!

Coordinates

chr3:-:27636381..27637361

Molecular Weight (calculated)

36042.1 Da

IEP (calculated)

7.891

GRAVY (calculated)

-0.375

Length

326 amino acids

Sequence
(BLAST)

001: MELSVVLPRG PQGLGPNGKP RTSSLESPIM LLSGHQSAVY TMKFNPAGTI IASGSHDKEI FLWNVRGDCK NFMVLKGHKN AVLDVQWTTD GSTIVSASPD
101: KTVRAWDVET GKQIKKMAEH SSFVNSCCPA RRGPPLIVSG SDDGTAKLWD MRQRGAIQTF PDKFQITAVS FSDASDKICT GGIDNDVKLW DLRRCEVTMT
201: LQGHQDTITG MQLSPDGSYL LTNAMDCTLR IWDMRPYAPQ NRCVKILEGH QHNFEKNLLK CSWSPDGSKV TGGSSDRMVY VWDTTSRRIL YKLPGHTGCV
301: NECVFHPNEP IVGSCSSDKH MYLGEI

Best Arabidopsis Sequence Match ( AT2G43770.1 )
(BLAST)

001: MEIMSRENET ALSGPRPMEW STVPHSASQG PGPNGKNRTS SLEAPIMLLS GHPSAVYTMK FNPAGTLIAS GSHDREIFLW RVHGDCKNFM VLKGHKNAIL
101: DLHWTSDGSQ IVSASPDKTV RAWDVETGKQ IKKMAEHSSF VNSCCPTRRG PPLIISGSDD GTAKLWDMRQ RGAIQTFPDK YQITAVSFSD AADKIFTGGV
201: DNDVKVWDLR KGEATMTLEG HQDTITGMSL SPDGSYLLTN GMDNKLCVWD MRPYAPQNRC VKIFEGHQHN FEKNLLKCSW SPDGTKVTAG SSDRMVHIWD
301: TTSRRTIYKL PGHTGSVNEC VFHPTEPIIG SCSSDKNIYL GEI

Arabidopsis Description

At2g43770 [Source:UniProtKB/TrEMBL;Acc:O22826]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.