Factsheet for Solyc02g091790.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078695	Potato	cytosol	99.36	99.36
VIT_07s0205g00150.t01	Wine grape	cytosol	82.8	83.07
KRH50874	Soybean	nucleus	79.62	75.99
KRH02239	Soybean	nucleus	78.03	74.02
AT3G49660.1	Thale cress	cytosol	73.57	72.87
CDX86957	Canola	cytosol	68.79	69.23
CDY00226	Canola	cytosol, nucleus, plastid	69.43	69.21
GSMUA_Achr2P08580_001	Banana	cytosol	62.1	68.66
Bra019610.1-P	Field mustard	plastid	69.11	68.45
OQU91075	Sorghum	cytosol	68.15	67.08
Zm00001d033849_P002	Maize	extracellular, nucleus	67.2	66.14
TraesCS4D01G056800.1	Wheat	cytosol	66.56	65.31
TraesCS4B01G056500.1	Wheat	cytosol	66.88	65.02
TraesCS4A01G258000.1	Wheat	cytosol	66.56	64.71
Os03t0725400-02	Rice	cytosol	66.24	64.2
GSMUA_Achr4P10720_001	Banana	cytosol, plastid	68.47	63.8
HORVU4Hr1G009500.1	Barley	cytosol, plastid	66.56	60.23
Solyc09g065290.2.1	Tomato	cytosol, plastid	58.6	58.41
Solyc03g059100.1.1	Tomato	nucleus	28.98	27.91
Solyc11g005550.1.1	Tomato	cytosol	26.43	27.76
Solyc09g010620.1.1	Tomato	cytosol	12.1	23.31
Solyc03g112530.2.1	Tomato	nucleus	32.8	21.41
Solyc07g008860.2.1	Tomato	cytoskeleton, cytosol, nucleus	24.84	19.65
Solyc03g111740.2.1	Tomato	cytosol	24.84	16.18
Solyc01g094480.2.1	Tomato	nucleus	21.66	14.11
Solyc08g067040.2.1	Tomato	nucleus	22.61	9.29
Solyc02g021360.2.1	Tomato	cytosol	21.66	8.52
Solyc04g008720.2.1	Tomato	cytosol	21.34	8.27
Solyc02g078800.2.1	Tomato	extracellular	21.02	6.41

Protein Annotations

MapMan:12.3.3.2.3	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0007275	GO:GO:0008150	GO:GO:0009791	GO:GO:0010228	GO:GO:0042393	GO:GO:0048188
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:K4BCX7	PFAM:PF00400	PIRSF:PIRSF002394
PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22847	PANTHER:PTHR22847:SF603
SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:Solyc02g091790.2	EnsemblPlants:Solyc02g091790.2.1	InterPro:Swd3-like	UniParc:UPI0002767B6F
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:

Description

COMPASS-like H3K4 histone methylase component WDR5A [Source:Projected from Arabidopsis thaliana (AT3G49660) UniProtKB/Swiss-Prot;Acc:Q9M2Z2]

Coordinates

chr2:+:53006792..53011348

Molecular Weight (calculated)

34486.5 Da

IEP (calculated)

6.842

GRAVY (calculated)

-0.259

Length

314 amino acids

Sequence
(BLAST)

001: MASPIETSES FKPYELKFTL SGHKRAISSV KFSDDGKILA TSSADKTART WDVSDGSLLH EFLGHEQGIS DVAFSSDGRH LVTASDDKTV RLWDVSTGSH
101: IKTLTGHTNY VFCVNFNPQA NMLVSGSFDE TVRLWDVKTG KCLKVLPAHS DPVTAVNFNR DGSLIVSSSY DGLCRIWDAS TGHCMKTIID DENPPVSFVK
201: FSPNGKFILV GTLDNSLRLW NFSTGKVLKT YTDHVNSKYC ISSTFSITNG KYIVSGSEDN CVYLWELQSR KIVQKLEGHT DTVISVSCNP TQNMIASGSL
301: GNDKTVKIWT QGGD

Best Arabidopsis Sequence Match ( AT3G49660.1 )
(BLAST)

001: MAEEIPATAS FTPYVHSQTL TSHNRAVSSV KFSSDGRLLA SASADKTIRT YTINTINDPI AEPVQEFTGH ENGISDVAFS SDARFIVSAS DDKTLKLWDV
101: ETGSLIKTLI GHTNYAFCVN FNPQSNMIVS GSFDETVRIW DVTTGKCLKV LPAHSDPVTA VDFNRDGSLI VSSSYDGLCR IWDSGTGHCV KTLIDDENPP
201: VSFVRFSPNG KFILVGTLDN TLRLWNISSA KFLKTYTGHV NAQYCISSAF SVTNGKRIVS GSEDNCVHMW ELNSKKLLQK LEGHTETVMN VACHPTENLI
301: ASGSLDKTVR IWTQKKE

Arabidopsis Description

WDR5AWDR5a [Source:UniProtKB/TrEMBL;Acc:A0A178VK59]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.