Factsheet for AT3G49660.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 4
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86957	Canola	cytosol	86.12	87.5
CDY00226	Canola	cytosol, nucleus, plastid	86.44	86.98
Bra019610.1-P	Field mustard	plastid	86.75	86.75
VIT_07s0205g00150.t01	Wine grape	cytosol	74.45	75.4
Solyc02g091790.2.1	Tomato	cytosol, nucleus	72.87	73.57
PGSC0003DMT400078695	Potato	cytosol	72.24	72.93
KRH50874	Soybean	nucleus	74.45	71.73
KRH02239	Soybean	nucleus	73.19	70.09
GSMUA_Achr2P08580_001	Banana	cytosol	59.31	66.2
OQU91075	Sorghum	cytosol	65.3	64.89
Zm00001d033849_P002	Maize	extracellular, nucleus	64.35	63.95
Os03t0725400-02	Rice	cytosol	64.98	63.58
TraesCS4B01G056500.1	Wheat	cytosol	64.35	63.16
TraesCS4D01G056800.1	Wheat	cytosol	63.72	63.12
TraesCS4A01G258000.1	Wheat	cytosol	63.72	62.54
GSMUA_Achr4P10720_001	Banana	cytosol, plastid	64.98	61.13
HORVU4Hr1G009500.1	Barley	cytosol, plastid	64.35	58.79
AT4G02730.1	Thale cress	cytosol	56.78	54.05
AT5G64730.1	Thale cress	cytosol	26.5	28.09
AT2G43770.1	Thale cress	cytosol	29.65	27.41
AT5G52820.1	Thale cress	cytosol	30.6	20.51
AT1G71840.1	Thale cress	nucleus	23.03	17.94
AT3G16650.1	Thale cress	cytosol	20.5	13.57
AT4G15900.1	Thale cress	cytosol	20.19	13.17
AT5G50230.1	Thale cress	cytosol	21.14	13.16
AT5G13480.2	Thale cress	nucleus	24.61	11.87
AT5G08390.1	Thale cress	cytosol	23.97	9.06
AT5G23430.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	23.34	8.84
AT1G11160.1	Thale cress	cytosol	21.45	6.66
AT1G61210.1	Thale cress	cytosol	22.71	6.1

Protein Annotations

MapMan:12.3.3.2.3	Gene3D:2.130.10.10	EntrezGene:824128	UniProt:A0A178VK59	ProteinID:AEE78573.1	ArrayExpress:AT3G49660
EnsemblPlantsGene:AT3G49660	RefSeq:AT3G49660	TAIR:AT3G49660	RefSeq:AT3G49660-TAIR-G	EnsemblPlants:AT3G49660.1	TAIR:AT3G49660.1
ProteinID:CAB66904.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000003	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009791	GO:GO:0010228
GO:GO:0016740	GO:GO:0032259	GO:GO:0042393	GO:GO:0048188	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	RefSeq:NP_190535.1	ProteinID:OAP05871.1	PFAM:PF00400	PIRSF:PIRSF002394	PO:PO:0000001
PO:PO:0000036	PO:PO:0000037	PO:PO:0000084	PO:PO:0000293	PO:PO:0001078	PO:PO:0001081
PO:PO:0004507	PO:PO:0007611	PO:PO:0009009	PO:PO:0009010	PO:PO:0009046	PO:PO:0009089
PO:PO:0020147	PO:PO:0025022	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22847	PANTHER:PTHR22847:SF602	UniProt:Q9M2Z2	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00000A07D7
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:

Description

WDR5AWDR5a [Source:UniProtKB/TrEMBL;Acc:A0A178VK59]

Coordinates

chr3:+:18413564..18415713

Molecular Weight (calculated)

34822.0 Da

IEP (calculated)

6.504

GRAVY (calculated)

-0.190

Length

317 amino acids

Sequence
(BLAST)

001: MAEEIPATAS FTPYVHSQTL TSHNRAVSSV KFSSDGRLLA SASADKTIRT YTINTINDPI AEPVQEFTGH ENGISDVAFS SDARFIVSAS DDKTLKLWDV
101: ETGSLIKTLI GHTNYAFCVN FNPQSNMIVS GSFDETVRIW DVTTGKCLKV LPAHSDPVTA VDFNRDGSLI VSSSYDGLCR IWDSGTGHCV KTLIDDENPP
201: VSFVRFSPNG KFILVGTLDN TLRLWNISSA KFLKTYTGHV NAQYCISSAF SVTNGKRIVS GSEDNCVHMW ELNSKKLLQK LEGHTETVMN VACHPTENLI
301: ASGSLDKTVR IWTQKKE

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.