Factsheet for Bra019610.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00226	Canola	cytosol, nucleus, plastid	99.05	99.68
AT3G49660.1	Thale cress	cytosol	86.75	86.75
VIT_07s0205g00150.t01	Wine grape	cytosol	70.66	71.57
Solyc02g091790.2.1	Tomato	cytosol, nucleus	68.45	69.11
PGSC0003DMT400078695	Potato	cytosol	68.14	68.79
KRH50874	Soybean	nucleus	69.72	67.17
KRH02239	Soybean	nucleus	68.45	65.56
GSMUA_Achr2P08580_001	Banana	cytosol	55.52	61.97
OQU91075	Sorghum	cytosol	61.2	60.81
Zm00001d033849_P002	Maize	extracellular, nucleus	60.57	60.19
Os03t0725400-02	Rice	cytosol	60.57	59.26
GSMUA_Achr4P10720_001	Banana	cytosol, plastid	62.78	59.05
TraesCS4B01G056500.1	Wheat	cytosol	59.94	58.82
TraesCS4D01G056800.1	Wheat	cytosol	59.31	58.75
TraesCS4A01G258000.1	Wheat	cytosol	59.31	58.2
HORVU4Hr1G009500.1	Barley	cytosol, plastid	59.62	54.47
Bra018529.1-P	Field mustard	cytosol	54.89	53.37
Bra024323.1-P	Field mustard	cytosol	25.24	26.94
Bra003387.1-P	Field mustard	cytosol	27.44	25.89
Bra004783.1-P	Field mustard	cytosol, golgi	29.02	22.17
Bra003111.1-P	Field mustard	nucleus	15.46	21.12
Bra009201.1-P	Field mustard	nucleus	30.6	20.21
Bra022611.1-P	Field mustard	cytosol	29.34	19.54
Bra003910.1-P	Field mustard	cytosol	23.03	19.31
Bra016111.1-P	Field mustard	cytosol	23.66	18.8
Bra007287.1-P	Field mustard	cytosol	17.98	14.25
Bra021188.1-P	Field mustard	cytosol	20.19	12.88
Bra012753.1-P	Field mustard	cytosol	19.24	12.68
Bra037932.1-P	Field mustard	mitochondrion	21.14	11.65
Bra023416.1-P	Field mustard	nucleus	23.34	11.44
Bra006202.1-P	Field mustard	nucleus	23.34	11.18
Bra005990.1-P	Field mustard	cytosol	24.61	9.2
Bra009683.1-P	Field mustard	cytosol	24.61	8.61
Bra031445.1-P	Field mustard	cytosol	22.4	6.33

Protein Annotations

MapMan:12.3.3.2.3	Gene3D:2.130.10.10	EnsemblPlantsGene:Bra019610	EnsemblPlants:Bra019610.1	EnsemblPlants:Bra019610.1-P	InterPro:G-protein_beta_WD-40_rep
GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0007275	GO:GO:0008150	GO:GO:0009791
GO:GO:0010228	GO:GO:0042393	GO:GO:0048188	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M4DSW7	PFAM:PF00400	PIRSF:PIRSF002394	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR22847	PANTHER:PTHR22847:SF602	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000253EF11
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:

Description

AT3G49660 (E=2e-161) | transducin family protein / WD-40 repeat family protein

Coordinates

chrA06:-:11779031..11780163

Molecular Weight (calculated)

34488.4 Da

IEP (calculated)

5.982

GRAVY (calculated)

-0.166

Length

317 amino acids

Sequence
(BLAST)

001: MAEEVPAAAA SYIPYVHSQT LTSHAHALSS LKFSSDGRLL ASASGDQTIR TYAINLKGDP IAEAAQVFTG HESGISDVAF STDARFIASA SDDKTVKLWD
101: VESGSLIKTL QGHTNYVFCV NFNPQSNMIA SGSFDETVRI WDVTTGKCLK VLPAHSDPVT AVDFNRDGSL IVSSSYDGLC RIWDSGTGHC VKTLMDDENP
201: PVSFVRFSPN GKFILVGTLD NTLRLWNISS AKYIKTYTGH ANSQYSVSSA FSVTNGKRIV SGSEDNCVYM WELNSRKLLQ KLEGHTEPVM SVACHPTENL
301: IASGSLDKSI RIWAQEE

Best Arabidopsis Sequence Match ( AT3G49660.1 )
(BLAST)

001: MAEEIPATAS FTPYVHSQTL TSHNRAVSSV KFSSDGRLLA SASADKTIRT YTINTINDPI AEPVQEFTGH ENGISDVAFS SDARFIVSAS DDKTLKLWDV
101: ETGSLIKTLI GHTNYAFCVN FNPQSNMIVS GSFDETVRIW DVTTGKCLKV LPAHSDPVTA VDFNRDGSLI VSSSYDGLCR IWDSGTGHCV KTLIDDENPP
201: VSFVRFSPNG KFILVGTLDN TLRLWNISSA KFLKTYTGHV NAQYCISSAF SVTNGKRIVS GSEDNCVHMW ELNSKKLLQK LEGHTETVMN VACHPTENLI
301: ASGSLDKTVR IWTQKKE

Arabidopsis Description

WDR5AWDR5a [Source:UniProtKB/TrEMBL;Acc:A0A178VK59]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.