Factsheet for Bra018529.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97287	Canola	cytosol	99.69	99.69
CDX91316	Canola	cytosol	99.39	99.39
CDX70436	Canola	plastid	49.69	97.01
AT4G02730.1	Thale cress	cytosol	90.18	88.29
VIT_07s0151g00960.t01	Wine grape	cytosol	67.79	70.16
Solyc09g065290.2.1	Tomato	cytosol, plastid	67.48	69.84
PGSC0003DMT400049837	Potato	cytosol, plastid	66.87	69.21
KRH71413	Soybean	nucleus	67.48	68.75
KRH32024	Soybean	cytosol	65.64	67.08
GSMUA_Achr7P01850_001	Banana	plastid	43.87	61.11
KXG36525	Sorghum	plastid	60.74	60.18
TraesCS2A01G196900.1	Wheat	plastid	61.04	60.12
TraesCS2B01G224500.1	Wheat	plastid	61.04	59.94
Zm00001d021868_P001	Maize	plastid	60.12	59.76
Zm00001d021866_P001	Maize	plastid	59.82	59.45
Os07t0572000-01	Rice	plastid	60.12	57.99
Bra019610.1-P	Field mustard	plastid	53.37	54.89
TraesCS2D01G204900.1	Wheat	cytosol, plastid	60.74	54.85
HORVU2Hr1G041020.2	Barley	cytosol, plastid	60.43	54.72
Bra024323.1-P	Field mustard	cytosol	26.38	28.96
Bra003387.1-P	Field mustard	cytosol	27.3	26.49
Bra004783.1-P	Field mustard	cytosol, golgi	27.3	21.45
Bra016111.1-P	Field mustard	cytosol	23.93	19.55
Bra003111.1-P	Field mustard	nucleus	13.8	19.4
Bra009201.1-P	Field mustard	nucleus	28.53	19.38
Bra003910.1-P	Field mustard	cytosol	22.39	19.31
Bra022611.1-P	Field mustard	cytosol	26.99	18.49
Bra007287.1-P	Field mustard	cytosol	18.71	15.25
Bra012753.1-P	Field mustard	cytosol	21.17	14.35
Bra021188.1-P	Field mustard	cytosol	21.17	13.88
Bra006202.1-P	Field mustard	nucleus	23.93	11.78
Bra023416.1-P	Field mustard	nucleus	23.31	11.75
Bra037932.1-P	Field mustard	mitochondrion	19.02	10.78
Bra005990.1-P	Field mustard	cytosol	21.17	8.14
Bra009683.1-P	Field mustard	cytosol	20.86	7.51
Bra031445.1-P	Field mustard	cytosol	20.25	5.88

Protein Annotations

MapMan:12.3.3.2.3	Gene3D:2.130.10.10	EnsemblPlantsGene:Bra018529	EnsemblPlants:Bra018529.1	EnsemblPlants:Bra018529.1-P	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M4DPT8	PFAM:PF00400	PIRSF:PIRSF002394	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR22847	PANTHER:PTHR22847:SF602	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000254731A
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

AT4G02730 (E=5e-169) | transducin family protein / WD-40 repeat family protein

Coordinates

chrA05:-:9005591..9006663

Molecular Weight (calculated)

35690.1 Da

IEP (calculated)

8.223

GRAVY (calculated)

-0.209

Length

326 amino acids

Sequence
(BLAST)

001: MPSGGNGVGN GAGTSGGSQT FKPYRHLKTL EGHTAAISCV KYSNDGNLLA SASLDKSMIL WSATNYSLIH RYEGHSSGVS DLAWSSDSHY TCSASDDCTL
101: RIWDARAPYE CLKVLRGHTN FVFCVNFNPP SNLIVSGSFD ETIRIWEVKT GRCVRVIKEA HSMPITSVHF NRDGSLIVSG SHDGSCKIWD AKEGTCLKTL
201: IDDKSPAVSF AKFSPNGKFI LVATLDSTLK LSNYASGKFI KVYTGHTNKV FCITSAFSVT NGKYIVSGSE DNCVYLWDLQ HKTILQRLQG HTDAVISVTC
301: HPLHNQIASS ANHLDRTIRI WKQEDA

Best Arabidopsis Sequence Match ( AT4G02730.1 )
(BLAST)

001: MPSGGNGTSN GVANANSTGN AGTSGNVPIY KPYRHLKTLE GHTAAISCVK FSNDGNLLAS ASVDKTMILW SATNYSLIHR YEGHSSGISD LAWSSDSHYT
101: CSASDDCTLR IWDARSPYEC LKVLRGHTNF VFCVNFNPPS NLIVSGSFDE TIRIWEVKTG KCVRMIKAHS MPISSVHFNR DGSLIVSASH DGSCKIWDAK
201: EGTCLKTLID DKSPAVSFAK FSPNGKFILV ATLDSTLKLS NYATGKFLKV YTGHTNKVFC ITSAFSVTNG KYIVSGSEDN CVYLWDLQAR NILQRLEGHT
301: DAVISVSCHP VQNEISSSGN HLDKTIRIWK QDA

Arabidopsis Description

WDR5BCOMPASS-like H3K4 histone methylase component WDR5B [Source:UniProtKB/Swiss-Prot;Acc:Q9SY00]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.