CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018529.1-P	Field mustard	cytosol	99.39	99.39
CDX97287	Canola	cytosol	99.08	99.08
CDX70436	Canola	plastid	49.69	97.01
AT4G02730.1	Thale cress	cytosol	90.8	88.89
VIT_07s0151g00960.t01	Wine grape	cytosol	68.1	70.48
Solyc09g065290.2.1	Tomato	cytosol, plastid	67.79	70.16
PGSC0003DMT400049837	Potato	cytosol, plastid	66.56	68.89
KRH71413	Soybean	nucleus	67.18	68.44
KRH32024	Soybean	cytosol	65.34	66.77
GSMUA_Achr7P01850_001	Banana	plastid	44.17	61.54
KXG36525	Sorghum	plastid	61.04	60.49
TraesCS2A01G196900.1	Wheat	plastid	61.35	60.42
TraesCS2B01G224500.1	Wheat	plastid	61.35	60.24
Zm00001d021868_P001	Maize	plastid	60.43	60.06
Zm00001d021866_P001	Maize	plastid	60.12	59.76
Os07t0572000-01	Rice	plastid	59.82	57.69
CDX86957	Canola	cytosol	53.68	56.09
TraesCS2D01G204900.1	Wheat	cytosol, plastid	61.04	55.12
HORVU2Hr1G041020.2	Barley	cytosol, plastid	60.74	55.0
CDY00226	Canola	cytosol, nucleus, plastid	53.07	54.92
CDY08856	Canola	cytosol	26.69	29.29
CDX84544	Canola	cytosol	26.69	29.0
CDX67810	Canola	cytosol	27.61	25.07
CDX79802	Canola	cytosol, golgi	27.3	21.45
CDY17912	Canola	cytosol, golgi	27.3	21.34
CDY50395	Canola	cytosol, extracellular, golgi, mitochondrion	20.86	21.32
CDY54233	Canola	golgi	11.96	20.97
CDX98392	Canola	endoplasmic reticulum, extracellular	26.99	19.86
CDY36678	Canola	cytosol	23.62	19.79
CDX96351	Canola	cytosol	23.93	19.55
CDX68298	Canola	cytosol	23.31	19.54
CDY52843	Canola	nucleus	13.8	19.4
CDX72834	Canola	cytosol	23.62	19.35
CDX72090	Canola	mitochondrion	19.63	19.16
CDX98931	Canola	nucleus	27.91	18.96
CDX96156	Canola	cytosol	27.61	18.91
CDX84790	Canola	cytosol	27.3	18.7
CDY27046	Canola	cytosol	27.3	18.7
CDX70097	Canola	cytosol	26.07	18.4
CDY09645	Canola	cytosol	26.38	18.18
CDX77842	Canola	cytosol, nucleus, peroxisome	5.52	18.18
CDY08014	Canola	mitochondrion	5.52	17.65
CDY34965	Canola	cytosol	21.17	14.68
CDX90556	Canola	cytosol	21.17	14.35
CDY09730	Canola	cytosol	21.17	14.35
CDY28352	Canola	cytosol	20.55	14.05
CDY27174	Canola	cytosol	6.44	13.73
CDX70506	Canola	nucleus	24.23	12.56
CDY05801	Canola	cytosol	19.33	12.55
CDX91118	Canola	nucleus	23.93	12.11
CDX85646	Canola	nucleus	23.62	11.9
CDX78524	Canola	nucleus	24.23	11.83
CDY44171	Canola	cytosol	5.52	11.61
CDY05802	Canola	mitochondrion	19.33	10.96
CDY34658	Canola	mitochondrion	20.25	8.62
CDY60225	Canola	cytosol	21.78	8.5
CDX88026	Canola	cytosol	21.47	8.44
CDX81101	Canola	cytosol	21.47	8.32
CDX80363	Canola	cytosol	20.55	7.88
CDY34846	Canola	nucleus	20.25	7.24
CDY01533	Canola	plastid	3.37	6.96
CDY52222	Canola	cytosol	20.55	5.97
CDY03812	Canola	cytosol	20.55	5.97
CDY15006	Canola	cytosol	18.1	5.82
CDY69403	Canola	nucleus	0.31	0.54

Protein Annotations

MapMan:12.3.3.2.3	Gene3D:2.130.10.10	EnsemblPlants:CDX91316	ProteinID:CDX91316	ProteinID:CDX91316.1	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00152582001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	PIRSF:PIRSF002394	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR22847	PANTHER:PTHR22847:SF602	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EED1A6
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

BnaC02g27270D

Coordinates

chrLK031866:+:1440483..1441724

Molecular Weight (calculated)

35690.1 Da

IEP (calculated)

8.223

GRAVY (calculated)

-0.207

Length

326 amino acids

Sequence
(BLAST)

001: MPSGGNGVGN GAGTSGGSQT FKPYRHLKTL EGHTAAISCV KYSNDGNLLA SASLDKSMIL WSATNYSLIH RYEGHSSGVS DLAWSSDSHY TCSASDDCTL
101: RIWDARAPYE CLKVLRGHTN FVFCVNFNPP SNLIVSGSFD ETIRIWEVKT GRCVRVIKEA HSMPITSVHF NRDGSLIVSG SHDGSCKIWD AKEGTCLKTL
201: IDDKSPAVSF AKFSPNGKFI LVATLDSTLK LSNYATGKFI KVYTGHTNKV FCITSAFSVT NGKYIVSGSE DNCVYLWDLQ HKTILQRLQG HTDAVISVTC
301: HPVHNQIASS ANHLDRTIRI WKQEDA

Best Arabidopsis Sequence Match ( AT4G02730.1 )
(BLAST)

001: MPSGGNGTSN GVANANSTGN AGTSGNVPIY KPYRHLKTLE GHTAAISCVK FSNDGNLLAS ASVDKTMILW SATNYSLIHR YEGHSSGISD LAWSSDSHYT
101: CSASDDCTLR IWDARSPYEC LKVLRGHTNF VFCVNFNPPS NLIVSGSFDE TIRIWEVKTG KCVRMIKAHS MPISSVHFNR DGSLIVSASH DGSCKIWDAK
201: EGTCLKTLID DKSPAVSFAK FSPNGKFILV ATLDSTLKLS NYATGKFLKV YTGHTNKVFC ITSAFSVTNG KYIVSGSEDN CVYLWDLQAR NILQRLEGHT
301: DAVISVSCHP VQNEISSSGN HLDKTIRIWK QDA

Arabidopsis Description

WDR5BCOMPASS-like H3K4 histone methylase component WDR5B [Source:UniProtKB/Swiss-Prot;Acc:Q9SY00]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.