CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023416.1-P	Field mustard	nucleus	98.45	97.99
CDX85646	Canola	nucleus	98.45	97.99
CDX70506	Canola	nucleus	90.06	92.21
CDX78524	Canola	nucleus	93.32	89.97
AT5G13480.2	Thale cress	nucleus	86.02	84.32
CDY01533	Canola	plastid	17.86	72.78
Solyc08g067040.2.1	Tomato	nucleus	69.25	58.38
Os01t0951000-02	Rice	cytosol, mitochondrion, nucleus	17.86	40.64
CDX86957	Canola	cytosol	11.96	24.68
CDX91316	Canola	cytosol	12.11	23.93
CDY00226	Canola	cytosol, nucleus, plastid	11.65	23.81
CDY54233	Canola	golgi	6.83	23.66
CDX97287	Canola	cytosol	11.96	23.62
CDX84544	Canola	cytosol	9.78	21.0
CDY08856	Canola	cytosol	9.63	20.88
CDX67810	Canola	cytosol	11.49	20.61
CDX72090	Canola	mitochondrion	10.4	20.06
CDX70436	Canola	plastid	5.12	19.76
CDY50395	Canola	cytosol, extracellular, golgi, mitochondrion	9.32	18.81
CDX68298	Canola	cytosol	10.87	17.99
CDY36678	Canola	cytosol	10.71	17.74
CDY52843	Canola	nucleus	6.37	17.67
CDY08014	Canola	mitochondrion	2.8	17.65
CDX96351	Canola	cytosol	10.87	17.54
CDX72834	Canola	cytosol	10.71	17.34
CDY09645	Canola	cytosol	12.73	17.34
CDX96156	Canola	cytosol	12.73	17.23
CDX84790	Canola	cytosol	12.73	17.23
CDY27046	Canola	cytosol	12.73	17.23
CDX77842	Canola	cytosol, nucleus, peroxisome	2.64	17.17
CDX98931	Canola	nucleus	12.73	17.08
CDX70097	Canola	cytosol	12.11	16.88
CDX79802	Canola	cytosol, golgi	10.87	16.87
CDY17912	Canola	cytosol, golgi	10.87	16.79
CDX98392	Canola	endoplasmic reticulum, extracellular	11.34	16.48
CDY09730	Canola	cytosol	11.49	15.38
CDX90556	Canola	cytosol	11.49	15.38
CDY34965	Canola	cytosol	11.18	15.32
CDY28352	Canola	cytosol	11.18	15.09
CDY27174	Canola	cytosol	3.57	15.03
CDY44171	Canola	cytosol	3.57	14.84
CDY05801	Canola	cytosol	11.18	14.34
CDY05802	Canola	mitochondrion	11.02	12.35
CDY34658	Canola	mitochondrion	14.44	12.14
CDY60225	Canola	cytosol	14.44	11.14
CDX88026	Canola	cytosol	14.29	11.1
CDX81101	Canola	cytosol	14.44	11.06
CDX80363	Canola	cytosol	13.98	10.59
CDY34846	Canola	nucleus	14.6	10.31
CDY52222	Canola	cytosol	13.66	7.84
CDY03812	Canola	cytosol	13.66	7.84
CDY15006	Canola	cytosol	12.27	7.79
CDY69403	Canola	nucleus	0.78	2.7

Protein Annotations

MapMan:16.2.1.2.7	Gene3D:2.130.10.10	EnsemblPlants:CDX91118	ProteinID:CDX91118	ProteinID:CDX91118.1	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00151903001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22836	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EF1E4E	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

BnaC02g04790D

Coordinates

chrLK031865:+:846949..851430

Molecular Weight (calculated)

71927.8 Da

IEP (calculated)

8.309

GRAVY (calculated)

-0.776

Length

644 amino acids

Sequence
(BLAST)

001: MYGDSMQQQL PPMHHPPMMR QPSASSTNIN PDYHHSSAPN HLDSHVDSFG GKRMRKHTQR RAVDYTSTVV RYIQARTWQR DSRDMTSLQP TPAAAVDMLP
101: PVAYSDNPST SFAAKFVHSS LNKNRCSINC VVWTPSGRRL ITGSQSGEFT LWNGQSFNFE MILQAHDQPI RSMVWSHNDI WMVSGDDGGT IKYWQSNMNN
201: VKANRTAHKE SVRGISFCKT DLKFCSCSDD TTVKVWDFAK CQEEISLTGH GWDVKCVDWH PTKSLLVSGG KDQLVKIWDT RTARELCSLH GHKNMVLSVK
301: WNQNGNWLLT ASKDQIVKLY DIRTMKELES FRGHKKDVTS LAWHPIHEEY FVSGSADGSV CHWIVGHENP QIEISNAHDN SVWDLAWHPI GYLLCSGSND
401: HTTKFWSRNR PADNPRDALT MQNQGYNEQG FSNRLPDSFQ PSEASPTPGA FVPGLTRNEG TIPGIGIAMP FDASSQGEHN QPLPGGMAPP LPPGPHPSLI
501: GSSQQQGYQQ QQQHHQGHPQ QIPPMPNMPH LQRPPPSHMP LRPHHPRPMQ MPPHMPPSSM PMSHQIPGPM GMQGGMNPQM SQGHYMGAPS GPFPGPPSSG
601: GPPMYPQGRG FNRPQMMQGY NNPFQQQPPP LPAGPPPNTN QQHQ

Best Arabidopsis Sequence Match ( AT5G13480.3 )
(BLAST)

001: MPQPPMMRQS SASSTNINPD YHHPSGPFDP NVDSFGAKRM RKHTQRRAVD YTSTVVRYIQ ARTWQRDSRD RTTLQPTPAA AVDMLPTVAY SDNPSTSFAA
101: KFVHASLNKN RCSINRVLWT PSGRRLITGS QSGEFTLWNG QSFNFEMILQ AHDQPIRSMV WSHNENYMVS GDDGGTLKYW QNNMNNVKAN KTAHKESIRD
201: LSFCKTDLKF CSCSDDTTVK VWDFTKCVDE SSLTGHGWDV KSVDWHPTKS LLVSGGKDQL VKLWDTRSGR ELCSLHGHKN IVLSVKWNQN GNWLLTASKD
301: QIIKLYDIRT MKELQSFRGH TKDVTSLAWH PCHEEYFVSG SSDGSICHWI VGHENPQIEI PNAHDNSVWD LAWHPIGYLL CSGSNDHTTK FWCRNRPADN
401: PRDVLMQNQG YNEQGFGRQP DNFQPSEASP IPGAFVPGLT RNEGTIPGIG IAMPFDASSQ GDHKQPLPGS MALGAPPLPP GPHPSLLGSG QQQGYQQQQQ
501: HQGHPQQMLP MPNMPHHQLP PSSHMPLHPH HLPRPMQMPP HGHMPPPSMP MSHQMPGSMG MQGGMNPQMS QSHFMGAPSG VFQGQPNSGG PQMYPQGRGG
601: FNRPQMIPGY NNPFQQVPFK H

Arabidopsis Description

FYTransducin/WD40 repeat-like superfamily protein [Source:TAIR;Acc:AT5G13480]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.