CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	golgi
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0776g00020.t01	Wine grape	cytosol, mitochondrion, nucleus	63.98	22.84
CDY34658	Canola	mitochondrion	77.96	18.93
KRH49977	Soybean	cytosol	65.05	17.66
KRH20528	Soybean	cytosol	66.67	15.94
CDY34846	Canola	nucleus	76.88	15.68
VIT_00s1397g00010.t01	Wine grape	cytosol	26.34	14.45
Os01t0780400-02	Rice	cytosol	60.75	13.48
CDY60225	Canola	cytosol	59.68	13.29
AT1G11160.1	Thale cress	cytosol	72.58	13.22
CDX81101	Canola	cytosol	59.14	13.08
TraesCS3D01G313800.1	Wheat	cytosol	58.06	13.04
CDX88026	Canola	cytosol	58.06	13.03
TraesCS3A01G317500.1	Wheat	cytosol	58.06	13.0
TraesCS3B01G349000.2	Wheat	cytosol	57.53	12.88
Zm00001d012620_P025	Maize	cytosol	56.99	12.71
CDX80363	Canola	cytosol	58.06	12.71
OQU87670	Sorghum	cytosol	56.45	12.62
Solyc02g078800.2.1	Tomato	extracellular	66.67	12.05
CDX91316	Canola	cytosol	20.97	11.96
CDX97287	Canola	cytosol	20.97	11.96
CDY15006	Canola	cytosol	64.52	11.83
GSMUA_Achr1P08830_001	Banana	cytosol	61.29	11.78
CDX67810	Canola	cytosol	22.58	11.7
CDX86957	Canola	cytosol	19.35	11.54
CDY03812	Canola	cytosol	69.35	11.49
CDY00226	Canola	cytosol, nucleus, plastid	19.35	11.43
CDY52222	Canola	cytosol	68.82	11.41
HORVU3Hr1G076760.7	Barley	cytosol, mitochondrion, nucleus	58.6	11.3
CDX72090	Canola	mitochondrion	18.28	10.18
CDX79802	Canola	cytosol, golgi	22.04	9.88
CDY17912	Canola	cytosol, golgi	22.04	9.83
CDX98392	Canola	endoplasmic reticulum, extracellular	22.58	9.48
CDY08856	Canola	cytosol	15.05	9.43
CDX84544	Canola	cytosol	15.05	9.33
CDY27174	Canola	cytosol	7.53	9.15
CDY44171	Canola	cytosol	6.99	8.39
CDX70436	Canola	plastid	7.53	8.38
CDY09730	Canola	cytosol	20.43	7.9
CDX90556	Canola	cytosol	20.43	7.9
CDY09645	Canola	cytosol	19.89	7.82
CDX72834	Canola	cytosol	16.67	7.79
CDX70097	Canola	cytosol	18.82	7.58
CDX96156	Canola	cytosol	19.35	7.56
CDY27046	Canola	cytosol	19.35	7.56
CDX84790	Canola	cytosol	19.35	7.56
CDY50395	Canola	cytosol, extracellular, golgi, mitochondrion	12.9	7.52
CDX96351	Canola	cytosol	16.13	7.52
CDX68298	Canola	cytosol	15.59	7.46
CDY28352	Canola	cytosol	18.82	7.34
CDX98931	Canola	nucleus	18.82	7.29
CDY34965	Canola	cytosol	18.28	7.23
CDY36678	Canola	cytosol	15.05	7.2
CDY05801	Canola	cytosol	19.35	7.17
CDY52843	Canola	nucleus	8.6	6.9
CDX70506	Canola	nucleus	23.12	6.84
CDX91118	Canola	nucleus	23.66	6.83
CDX85646	Canola	nucleus	23.12	6.65
CDX78524	Canola	nucleus	23.12	6.44
CDY05802	Canola	mitochondrion	19.89	6.43
CDX77842	Canola	cytosol, nucleus, peroxisome	2.15	4.04
CDY08014	Canola	mitochondrion	2.15	3.92
CDY01533	Canola	plastid	2.69	3.16
PGSC0003DMT400057760	Potato	cytosol	7.53	1.76
CDY69403	Canola	nucleus	0.0	0.0

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A078IYP8	EnsemblPlants:CDY54233	ProteinID:CDY54233	ProteinID:CDY54233.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00013633001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19845
PANTHER:PTHR19845:SF5	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EDF76E	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:

Description

BnaC08g49900DBnaC08g49900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IYP8]

Coordinates

chrLK033293:-:36640..38567

Molecular Weight (calculated)

20662.9 Da

IEP (calculated)

7.871

GRAVY (calculated)

-0.062

Length

186 amino acids

Sequence
(BLAST)

001: MDVTSSYRLG CIKSVASITS ILFICLRICS SHAHHNITSG SSDANLKIWD IRKKGCIQTY KGHTRGISTV KFTPDGRWLV SGGLDNVVKL LHEFKFHDGP
101: IRSLDSHPLE FLLATGSADR TVKPEATGVR SIAFHPDGQT LFCGLDDGLK VYSWEPMICR DSVWVWVSDI SKLEPLELDL RMGMNA

Best Arabidopsis Sequence Match ( AT1G11160.1 )
(BLAST)

0001: MAKRGYKLQE FVAHSGNVNC LSIGKKTSRL LLTGGDDYKV NLWSIGKTTS PMSLCGHTSP VDSVAFNSEE VLVLAGASSG VIKLWDLEES KMVRAFTGHR
0101: SNCSAVEFHP FGEFLASGSS DTNLRVWDTR KKGCIQTYKG HTRGISTIEF SPDGRWVVSG GLDNVVKVWD LTAGKLLHEF KCHEGPIRSL DFHPLEFLLA
0201: TGSADRTVKF WDLETFELIG TTRPEATGVR AIAFHPDGQT LFCGLDDGLK VYSWEPVICR DGVDMGWSTL GDFCINEGKF IGCSYYRNSV GIWVSDISEL
0301: EPYGAVSEDK NECMVKRFSV LNDQSERMGS GPRGSVSPDY ETREIKNIYV DSTGGNLNVA QNPGSLKATL PLESGKVATM VSEKQNAAYF GPAGDKYSST
0401: SRDSDSGEES SYSERESIPF SRTKSGMLLR PAHVRKTLAK FEESKQSAVV QSATRKKSGL AVEEEPQTQN AFLSEQNASK PFDAEDSIIK GITNKFEKAL
0501: SSEPPTDEAN RMFLKPPRIH RSSNSKYNDT RRAMSADPAT FGKGGMENSG DVEDIPSKTE RVLSREKPGD EQKNTEYPSG SRELNPVKIV EGVNVVSGRT
0601: RSLVEKFERG EKTTHTEGAS TTIEQNNNAV QEDPRKTSRQ TGETPVISTR RARSTPARVM PIVLNRDSNV TSDEPPLTQP ARTSSFPVMP VILNQASNVT
0701: YDEPSVALTQ ESRTSHARIL PVTFNQATNI TSEEASVTLR RQRRNSAARV RPVLLSQATS HECPVTSVRP LRTSPARVMP TKLNQSVNMT SDTSHIASMH
0801: RVSPTQMLAT PTVIDQVADM TLDETHATQI QPACDNMPQK EEPNISDRED DSDITENLML THNEFLSTLQ SRLTKLQIVR HFWERSDVKG AIGALRKLTD
0901: QSVQADVISI LTEKIEILTL DMFSQLVPVL TSLLGSRTER PVNVSLDMLL KLVAVFGTVI RSTVSAPRIV GVDLHANERL EICQICSAGL HKIQRILPVL
1001: ARRGGLITRK AQELNLVLQE P

Arabidopsis Description

Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/TrEMBL;Acc:F4I7E1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.