CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00226	Canola	cytosol, nucleus, plastid	96.47	95.56
AT3G49660.1	Thale cress	cytosol	87.5	86.12
VIT_07s0205g00150.t01	Wine grape	cytosol	71.79	71.57
Solyc02g091790.2.1	Tomato	cytosol, nucleus	69.23	68.79
PGSC0003DMT400078695	Potato	cytosol	68.91	68.47
KRH50874	Soybean	nucleus	71.15	67.48
KRH02239	Soybean	nucleus	70.19	66.16
GSMUA_Achr2P08580_001	Banana	cytosol	56.41	61.97
OQU91075	Sorghum	cytosol	61.86	60.5
Zm00001d033849_P002	Maize	extracellular, nucleus	60.9	59.56
Os03t0725400-02	Rice	cytosol	61.54	59.26
GSMUA_Achr4P10720_001	Banana	cytosol, plastid	63.14	58.46
TraesCS4D01G056800.1	Wheat	cytosol	59.94	58.44
TraesCS4B01G056500.1	Wheat	cytosol	60.26	58.2
TraesCS4A01G258000.1	Wheat	cytosol	59.94	57.89
HORVU4Hr1G009500.1	Barley	cytosol, plastid	60.58	54.47
CDX97287	Canola	cytosol	56.41	53.99
CDX91316	Canola	cytosol	56.09	53.68
CDX70436	Canola	plastid	23.72	44.31
CDY08856	Canola	cytosol	25.64	26.94
CDX84544	Canola	cytosol	25.64	26.67
CDX67810	Canola	cytosol	28.85	25.07
CDY17912	Canola	cytosol, golgi	29.49	22.06
CDX79802	Canola	cytosol, golgi	29.17	21.93
CDY52843	Canola	nucleus	15.71	21.12
CDX98392	Canola	endoplasmic reticulum, extracellular	28.53	20.09
CDY50395	Canola	cytosol, extracellular, golgi, mitochondrion	20.51	20.06
CDX98931	Canola	nucleus	30.45	19.79
CDY36678	Canola	cytosol	24.36	19.54
CDY54233	Canola	golgi	11.54	19.35
CDX96156	Canola	cytosol	29.49	19.33
CDX84790	Canola	cytosol	29.49	19.33
CDY27046	Canola	cytosol	29.49	19.33
CDX68298	Canola	cytosol	24.04	19.28
CDX96351	Canola	cytosol	24.36	19.05
CDX72834	Canola	cytosol	23.72	18.59
CDX72090	Canola	mitochondrion	19.87	18.56
CDY09645	Canola	cytosol	27.88	18.39
CDX70097	Canola	cytosol	26.92	18.18
CDX77842	Canola	cytosol, nucleus, peroxisome	5.13	16.16
CDY08014	Canola	mitochondrion	5.13	15.69
CDY34965	Canola	cytosol	20.51	13.62
CDY05801	Canola	cytosol	21.79	13.55
CDY28352	Canola	cytosol	19.87	13.0
CDY09730	Canola	cytosol	19.55	12.68
CDX90556	Canola	cytosol	19.55	12.68
CDX70506	Canola	nucleus	24.68	12.24
CDX91118	Canola	nucleus	24.68	11.96
CDY27174	Canola	cytosol	5.77	11.76
CDX85646	Canola	nucleus	24.36	11.75
CDY05802	Canola	mitochondrion	21.47	11.65
CDY44171	Canola	cytosol	5.77	11.61
CDX78524	Canola	nucleus	24.68	11.53
CDX88026	Canola	cytosol	25.0	9.41
CDY60225	Canola	cytosol	25.0	9.34
CDX81101	Canola	cytosol	24.68	9.16
CDX80363	Canola	cytosol	24.68	9.06
CDY34658	Canola	mitochondrion	22.12	9.01
CDY34846	Canola	nucleus	22.12	7.57
CDY52222	Canola	cytosol	22.44	6.24
CDY03812	Canola	cytosol	22.44	6.23
CDY15006	Canola	cytosol	19.87	6.11
CDY01533	Canola	plastid	2.56	5.06
CDY69403	Canola	nucleus	0.32	0.54

Protein Annotations

MapMan:12.3.3.2.3	Gene3D:2.130.10.10	EnsemblPlants:CDX86957	ProteinID:CDX86957	ProteinID:CDX86957.1	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00145779001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	PIRSF:PIRSF002394	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR22847	PANTHER:PTHR22847:SF602	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EDDD5E
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:

Description

BnaC03g52270D

Coordinates

chrLK031848:-:848054..849486

Molecular Weight (calculated)

34098.0 Da

IEP (calculated)

6.277

GRAVY (calculated)

-0.201

Length

312 amino acids

Sequence
(BLAST)

001: MAEEAAYIPY VHCQTLNSHG HALSSVKFSS DGRLLASASG DQTIRTYAIN LKGDPIAEPA QVFTGHDSGI SDVAFSTDAR FIASASDDKT LKLWDVETGS
101: LIKTLHGHTN YVFCVNFNPQ SNMIASGSFD ETVRIWDVTT GKCLKVLPAH SDPVTAVDFN RDGSLIVSSS YDGLCRIWDS GTGHCVKTLM DDENPPVSFV
201: RFSPNGKFIL VGTLDNTLRL WNISSAKYIK TYTGHANSQY SVSSAFSVTN GKRIVSGSED NCVYMWELNS RKLLQKLEGH TEPVMSVACH PTENLIASGS
301: LDKSIRIWAQ EN

Best Arabidopsis Sequence Match ( AT3G49660.1 )
(BLAST)

001: MAEEIPATAS FTPYVHSQTL TSHNRAVSSV KFSSDGRLLA SASADKTIRT YTINTINDPI AEPVQEFTGH ENGISDVAFS SDARFIVSAS DDKTLKLWDV
101: ETGSLIKTLI GHTNYAFCVN FNPQSNMIVS GSFDETVRIW DVTTGKCLKV LPAHSDPVTA VDFNRDGSLI VSSSYDGLCR IWDSGTGHCV KTLIDDENPP
201: VSFVRFSPNG KFILVGTLDN TLRLWNISSA KFLKTYTGHV NAQYCISSAF SVTNGKRIVS GSEDNCVHMW ELNSKKLLQK LEGHTETVMN VACHPTENLI
301: ASGSLDKTVR IWTQKKE

Arabidopsis Description

WDR5AWDR5a [Source:UniProtKB/TrEMBL;Acc:A0A178VK59]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.