CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006202.1-P	Field mustard	nucleus	97.75	98.64
CDX70506	Canola	nucleus	92.22	97.93
CDX91118	Canola	nucleus	89.97	93.32
CDX85646	Canola	nucleus	90.27	93.2
AT5G13480.2	Thale cress	nucleus	85.03	86.45
CDY01533	Canola	plastid	18.11	76.58
Solyc08g067040.2.1	Tomato	nucleus	69.46	60.73
Os01t0951000-02	Rice	cytosol, mitochondrion, nucleus	18.26	43.11
CDX86957	Canola	cytosol	11.53	24.68
CDX91316	Canola	cytosol	11.83	24.23
CDX97287	Canola	cytosol	11.68	23.93
CDY00226	Canola	cytosol, nucleus, plastid	11.08	23.49
CDY54233	Canola	golgi	6.44	23.12
CDX67810	Canola	cytosol	11.08	20.61
CDX84544	Canola	cytosol	9.13	20.33
CDY08856	Canola	cytosol	8.98	20.2
CDX72090	Canola	mitochondrion	10.03	20.06
CDX70436	Canola	plastid	4.94	19.76
CDY50395	Canola	cytosol, extracellular, golgi, mitochondrion	8.68	18.18
CDY52843	Canola	nucleus	6.29	18.1
CDX68298	Canola	cytosol	10.18	17.48
CDY36678	Canola	cytosol	10.03	17.22
CDY09645	Canola	cytosol	12.13	17.12
CDX98931	Canola	nucleus	12.13	16.88
CDX96156	Canola	cytosol	11.98	16.81
CDX84790	Canola	cytosol	11.98	16.81
CDY27046	Canola	cytosol	11.98	16.81
CDX96351	Canola	cytosol	10.03	16.79
CDY08014	Canola	mitochondrion	2.54	16.67
CDX70097	Canola	cytosol	11.53	16.67
CDX79802	Canola	cytosol, golgi	10.33	16.63
CDX72834	Canola	cytosol	9.88	16.58
CDY17912	Canola	cytosol, golgi	10.33	16.55
CDX98392	Canola	endoplasmic reticulum, extracellular	10.78	16.25
CDX77842	Canola	cytosol, nucleus, peroxisome	2.4	16.16
CDY09730	Canola	cytosol	11.23	15.59
CDX90556	Canola	cytosol	11.23	15.59
CDY34965	Canola	cytosol	10.78	15.32
CDY28352	Canola	cytosol	10.78	15.09
CDY27174	Canola	cytosol	3.44	15.03
CDY05801	Canola	cytosol	10.78	14.34
CDY44171	Canola	cytosol	3.29	14.19
CDY05802	Canola	mitochondrion	10.63	12.35
CDY34658	Canola	mitochondrion	13.47	11.75
CDY60225	Canola	cytosol	13.77	11.02
CDX88026	Canola	cytosol	13.62	10.98
CDX81101	Canola	cytosol	13.77	10.94
CDX80363	Canola	cytosol	13.47	10.59
CDY34846	Canola	nucleus	13.62	9.98
CDY15006	Canola	cytosol	11.38	7.5
CDY52222	Canola	cytosol	12.57	7.49
CDY03812	Canola	cytosol	12.57	7.48
CDY69403	Canola	nucleus	0.75	2.7

Protein Annotations

MapMan:16.2.1.2.7	Gene3D:2.130.10.10	InterPro:Apc4_WD40_dom	EnsemblPlants:CDX78524	ProteinID:CDX78524	ProteinID:CDX78524.1
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00129926001	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PFAM:PF12894	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22836	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EDC470
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

BnaA03g04360D

Coordinates

chrLK031815:-:1144935..1149660

Molecular Weight (calculated)

74425.9 Da

IEP (calculated)

8.033

GRAVY (calculated)

-0.808

Length

668 amino acids

Sequence
(BLAST)

001: MYGGGDSMQQ QQQQQQLPPM QNQHHVAAGG PPMHPPPMMR HPSASSTNIN PDYHHPSAPN PFDSHVDSFG AKRMRKHTQR KAVDYTSTVV RYIQARTWQR
101: DSRDMTSLQP TPAAAVDMLP PVAYSDNPST SFAAKFVHSS LNKNRCSINC VLWTPSGRRL ITGSQSGEFT LWNGQSFNFE MILQAHDQPI RSMVWSHNDI
201: WMVSGDDGGT LKYWQSNMNN VKANRTAHKE SIRDLSFCKT DLKFCSCSDD TTVKVWDFTK CQEEITLTGH GWDVKCVDWH PTKSLLVSGG KDQLVKIWDA
301: RTARELCSLH GHKNMVLSVK WNQNGNLLLT ASKDQIIKLY DIRTMKELES FRGHTKDVTS LAWHPSHEEY FVSGSLDGSI CHWIVGHENP QIEIPNAHDN
401: SVWDLAWHPI GYLLCSGSND HTTKFWCRNR PGDNPRDALT MQNQGYNEQG FGNRMPDNFQ PSEASPTPGA FVPGLTRNEG TIPGIGIAMS FDGSSQGEHK
501: QPLPGGMAPP LPPGPHPSLI GSGQQQGYQQ QQHHHQGHPQ QIPPMPNMPH LQRPPSSHMP LHPHPHHPRP MQMPPHGHMP PSSMPMPHQM PGPMGMQGGM
601: NPQMSQGHYM GPASGAFQGP PSSGGPMYPQ GRGFNRPQMM PGYNNPFQQQ PQPPLPGGPP PNTNQQHQ

Best Arabidopsis Sequence Match ( AT5G13480.3 )
(BLAST)

001: MPQPPMMRQS SASSTNINPD YHHPSGPFDP NVDSFGAKRM RKHTQRRAVD YTSTVVRYIQ ARTWQRDSRD RTTLQPTPAA AVDMLPTVAY SDNPSTSFAA
101: KFVHASLNKN RCSINRVLWT PSGRRLITGS QSGEFTLWNG QSFNFEMILQ AHDQPIRSMV WSHNENYMVS GDDGGTLKYW QNNMNNVKAN KTAHKESIRD
201: LSFCKTDLKF CSCSDDTTVK VWDFTKCVDE SSLTGHGWDV KSVDWHPTKS LLVSGGKDQL VKLWDTRSGR ELCSLHGHKN IVLSVKWNQN GNWLLTASKD
301: QIIKLYDIRT MKELQSFRGH TKDVTSLAWH PCHEEYFVSG SSDGSICHWI VGHENPQIEI PNAHDNSVWD LAWHPIGYLL CSGSNDHTTK FWCRNRPADN
401: PRDVLMQNQG YNEQGFGRQP DNFQPSEASP IPGAFVPGLT RNEGTIPGIG IAMPFDASSQ GDHKQPLPGS MALGAPPLPP GPHPSLLGSG QQQGYQQQQQ
501: HQGHPQQMLP MPNMPHHQLP PSSHMPLHPH HLPRPMQMPP HGHMPPPSMP MSHQMPGSMG MQGGMNPQMS QSHFMGAPSG VFQGQPNSGG PQMYPQGRGG
601: FNRPQMIPGY NNPFQQVPFK H

Arabidopsis Description

FYTransducin/WD40 repeat-like superfamily protein [Source:TAIR;Acc:AT5G13480]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.