CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022611.1-P	Field mustard	cytosol	98.74	98.74
CDY27046	Canola	cytosol	98.74	98.74
CDX84790	Canola	cytosol	98.53	98.53
CDY52843	Canola	nucleus	44.54	91.38
CDY50395	Canola	cytosol, extracellular, golgi, mitochondrion	55.04	82.13
VIT_13s0064g00360.t01	Wine grape	nucleus	78.99	78.83
Solyc03g112530.2.1	Tomato	nucleus	79.41	78.59
PGSC0003DMT400046634	Potato	cytosol	79.41	78.59
KRH70275	Soybean	nucleus	78.78	78.12
GSMUA_Achr3P29050_001	Banana	nucleus	77.94	77.62
KRH08668	Soybean	nucleus	77.94	77.29
CDX98931	Canola	nucleus	76.05	75.42
CDX70097	Canola	cytosol	72.06	74.24
CDY09645	Canola	cytosol	73.11	73.57
CDY08014	Canola	mitochondrion	11.76	54.9
CDX77842	Canola	cytosol, nucleus, peroxisome	11.13	53.54
VIT_13s0064g00330.t01	Wine grape	extracellular	14.71	53.44
CDY00226	Canola	cytosol, nucleus, plastid	19.54	29.52
CDX86957	Canola	cytosol	19.33	29.49
CDX91316	Canola	cytosol	18.91	27.61
CDX97287	Canola	cytosol	18.7	27.3
CDX70436	Canola	plastid	8.19	23.35
CDX67810	Canola	cytosol	17.02	22.56
CDX72090	Canola	mitochondrion	15.13	21.56
CDX84544	Canola	cytosol	13.45	21.33
CDY08856	Canola	cytosol	13.24	21.21
CDY36678	Canola	cytosol	16.18	19.79
CDX79802	Canola	cytosol, golgi	17.23	19.76
CDY17912	Canola	cytosol, golgi	17.23	19.66
CDX96351	Canola	cytosol	16.39	19.55
CDY54233	Canola	golgi	7.56	19.35
CDX72834	Canola	cytosol	16.18	19.35
CDX68298	Canola	cytosol	15.76	19.28
CDX98392	Canola	endoplasmic reticulum, extracellular	16.81	18.06
CDY09730	Canola	cytosol	15.97	15.8
CDX90556	Canola	cytosol	15.97	15.8
CDY34965	Canola	cytosol	15.55	15.74
CDY27174	Canola	cytosol	4.83	15.03
CDY05801	Canola	cytosol	15.76	14.94
CDY28352	Canola	cytosol	14.92	14.88
CDY44171	Canola	cytosol	4.62	14.19
CDY05802	Canola	mitochondrion	15.76	13.04
CDX91118	Canola	nucleus	17.23	12.73
CDX85646	Canola	nucleus	17.23	12.67
CDX70506	Canola	nucleus	16.18	12.24
CDX78524	Canola	nucleus	16.81	11.98
CDY34658	Canola	mitochondrion	15.97	9.92
CDX88026	Canola	cytosol	16.18	9.29
CDX80363	Canola	cytosol	16.18	9.06
CDY60225	Canola	cytosol	15.76	8.98
CDX81101	Canola	cytosol	15.55	8.8
CDY34846	Canola	nucleus	16.39	8.55
CDY01533	Canola	plastid	2.31	6.96
CDY52222	Canola	cytosol	16.39	6.95
CDY03812	Canola	cytosol	16.39	6.95
CDY15006	Canola	cytosol	13.87	6.51
CDY69403	Canola	nucleus	1.68	4.32
Os01t0531300-00	Rice	endoplasmic reticulum, extracellular	0.63	1.35

Protein Annotations

MapMan:17.1.2.2.1.12	Gene3D:2.130.10.10	GO:A0A078E4C9	EnsemblPlants:CDX96156	ProteinID:CDX96156	ProteinID:CDX96156.1
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00102218001	InterPro:Gprotein_B
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	InterPro:NLE	PFAM:PF00400	PFAM:PF08154
PRINTS:PR00319	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19848
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EE3A4E	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:	:

Description

BnaC02g14950D

Coordinates

chrLK031893:+:45875..48682

Molecular Weight (calculated)

52987.1 Da

IEP (calculated)

8.261

GRAVY (calculated)

-0.379

Length

476 amino acids

Sequence
(BLAST)

001: MNMETSQAGM GNNTVMCLLT DPEGTNLGSA MYIPQTAGPL QLTQLVNRFL NNEEMLPYSF YVSDEELLVP VGTYLEKNQV SVEKVLTIVY QQQAVFRIRP
101: VNRCSQTIAG HAEAVLCVSF SPDGKQLASG SGDTTVRLWD LNTETPLFTC KGHRNWVLSI AWSPDGKHLV SGSKSGEICC WNPKKGELDG NPLTGHKKWI
201: TGISWEPVHL SSPCRRFVTS SKDGDARIWD VTLKKTLICL SGHTLAVTCV KWGGDGIIYT GSQDCTIKMW ETTQGKLIRE LKGHGHWVNS LALSTEYVLR
301: TGAFDHTGRQ YPPNEEMKKA LERYNQTKGD SPERLVSGSD DFTMFLWEPS VSKQPKKRLT GHQQLVNHVY FSPDGKWIAS ASFDRSVRLW NGVTGQFVTA
401: FRGHVGPVYQ VSWSADSRLL LSGSKDSTLK IWEIRTKTLK QDLPGHADEV FAVDWSPDGE KVVSGGKDKV LKLWKG

Best Arabidopsis Sequence Match ( AT5G52820.1 )
(BLAST)

001: MTMMDTDEGK TVMCLLTDPE GTHLGSAMYI PQKAGPLQLT QLVNRFLDNE EMLPYSFYVS DEELLVPVGT YLEKNKVSVE KVLTIVYQQQ AVFRIRPVNR
101: CSQTIAGHAE AVLCVSFSPD GKQLASGSGD TTVRLWDLYT ETPLFTCKGH KNWVLTVAWS PDGKHLVSGS KSGEICCWNP KKGELEGSPL TGHKKWITGI
201: SWEPVHLSSP CRRFVTSSKD GDARIWDITL KKSIICLSGH TLAVTCVKWG GDGIIYTGSQ DCTIKMWETT QGKLIRELKG HGHWINSLAL STEYVLRTGA
301: FDHTGRQYPP NEEKQKALER YNKTKGDSPE RLVSGSDDFT MFLWEPSVSK QPKKRLTGHQ QLVNHVYFSP DGKWIASASF DKSVRLWNGI TGQFVTVFRG
401: HVGPVYQVSW SADSRLLLSG SKDSTLKIWE IRTKKLKQDL PGHADEVFAV DWSPDGEKVV SGGKDRVLKL WKG

Arabidopsis Description

NLE1NLE [Source:UniProtKB/TrEMBL;Acc:A0A178UNZ3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.