CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009201.1-P	Field mustard	nucleus	99.13	95.42
CDX98931	Canola	nucleus	97.62	93.96
CDX77842	Canola	cytosol, nucleus, peroxisome	16.23	75.76
CDY08014	Canola	mitochondrion	16.67	75.49
CDX96156	Canola	cytosol	74.24	72.06
CDY27046	Canola	cytosol	74.03	71.85
CDX84790	Canola	cytosol	74.03	71.85
CDY09645	Canola	cytosol	67.53	65.96
CDY50395	Canola	cytosol, extracellular, golgi, mitochondrion	44.37	64.26
CDY52843	Canola	nucleus	31.82	63.36
TraesCS1A01G443600.1	Wheat	cytosol	63.42	61.68
TraesCS1B01G478100.1	Wheat	cytosol	63.2	61.34
TraesCS1D01G451700.1	Wheat	cytosol	62.99	61.26
EES18812	Sorghum	cytosol	62.34	60.13
Os10t0104500-01	Rice	cytosol	62.12	59.79
Os11t0594200-01	Rice	cytosol	61.69	59.38
HORVU1Hr1G095080.1	Barley	cytosol, plastid	63.42	58.25
Zm00001d039211_P006	Maize	cytosol	62.55	58.15
CDY00226	Canola	cytosol, nucleus, plastid	18.4	26.98
CDX86957	Canola	cytosol	18.18	26.92
CDX91316	Canola	cytosol	18.4	26.07
CDX97287	Canola	cytosol	18.18	25.77
CDX84544	Canola	cytosol	13.85	21.33
CDY08856	Canola	cytosol	13.64	21.21
CDX72090	Canola	mitochondrion	14.29	19.76
CDX70436	Canola	plastid	7.14	19.76
CDX67810	Canola	cytosol	14.72	18.94
CDY54233	Canola	golgi	7.58	18.82
CDY36678	Canola	cytosol	14.29	16.97
CDX68298	Canola	cytosol	13.85	16.45
CDX79802	Canola	cytosol, golgi	14.72	16.39
CDX72834	Canola	cytosol	14.07	16.33
CDY17912	Canola	cytosol, golgi	14.5	16.07
CDX96351	Canola	cytosol	13.85	16.04
CDX98392	Canola	endoplasmic reticulum, extracellular	14.72	15.35
CDY05801	Canola	cytosol	16.67	15.34
CDY34965	Canola	cytosol	15.15	14.89
CDX90556	Canola	cytosol	15.15	14.55
CDY09730	Canola	cytosol	15.15	14.55
CDY28352	Canola	cytosol	14.94	14.47
CDY44171	Canola	cytosol	4.55	13.55
CDY05802	Canola	mitochondrion	16.67	13.39
CDY27174	Canola	cytosol	4.33	13.07
CDX91118	Canola	nucleus	16.88	12.11
CDX85646	Canola	nucleus	16.88	12.06
CDX70506	Canola	nucleus	16.23	11.92
CDX78524	Canola	nucleus	16.67	11.53
CDY34658	Canola	mitochondrion	14.29	8.62
CDY60225	Canola	cytosol	14.5	8.02
CDX88026	Canola	cytosol	14.29	7.96
CDX81101	Canola	cytosol	14.29	7.85
CDX80363	Canola	cytosol	14.29	7.76
CDY01533	Canola	plastid	2.6	7.59
CDY34846	Canola	nucleus	14.72	7.46
CDY52222	Canola	cytosol	15.58	6.42
CDY03812	Canola	cytosol	15.58	6.41
CDY15006	Canola	cytosol	12.99	5.92
CDY69403	Canola	nucleus	1.73	4.32

Protein Annotations

MapMan:17.1.2.2.1.12	Gene3D:2.130.10.10	GO:A0A078C065	EnsemblPlants:CDX70097	ProteinID:CDX70097	ProteinID:CDX70097.1
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00136205001	InterPro:Gprotein_B
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	InterPro:NLE	PFAM:PF00400	PFAM:PF08154
PRINTS:PR00319	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19848
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EF123B	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:	:

Description

BnaA10g24460D

Coordinates

chrLK031790:+:3077707..3080158

Molecular Weight (calculated)

51695.8 Da

IEP (calculated)

7.713

GRAVY (calculated)

-0.276

Length

462 amino acids

Sequence
(BLAST)

001: MAMNTVMCLL TDAEGTPLGS AMYIPHNAGH LQLINLVNTF LNNEEKLSYS FYVSDEELLV SVGTYMERNS VSVENVLKIV YRQQAVFRIR PVYRCSQTIS
101: DVHEGEILCV SLWDLNTETP MFTCKGHKEH VLAVAWSPDA KCLVSGDRDG KVCCWDPSKG ELLGNALSGH KKWICGIAWE PAHLSYPSRR FVTCGKDGDA
201: RIWDFTLKRT LIVLSGHTRA VTCVKWGGDG TIYTGSQDST IRMWEITQQG QGILKHILKD HAGWVNSLSL STEYVLRTGA FDNTRQVTGS DEEMKKIALE
301: RYIKAKGKVD SPERLVSGSD DFTIILWEPS VSLQPKQKMV TTARLTGHQQ LVNHVYFSPN GQWIASASFD KSVKLWDGVT GKFITAFRGH ANCVYQISWS
401: PDSRMLLSCS KDSTLKVWDI GTKKLKHDLP GHKDEVWAVD WSPDGEKVAS GGLDKDLKLW KG

Best Arabidopsis Sequence Match ( AT5G52820.1 )
(BLAST)

001: MTMMDTDEGK TVMCLLTDPE GTHLGSAMYI PQKAGPLQLT QLVNRFLDNE EMLPYSFYVS DEELLVPVGT YLEKNKVSVE KVLTIVYQQQ AVFRIRPVNR
101: CSQTIAGHAE AVLCVSFSPD GKQLASGSGD TTVRLWDLYT ETPLFTCKGH KNWVLTVAWS PDGKHLVSGS KSGEICCWNP KKGELEGSPL TGHKKWITGI
201: SWEPVHLSSP CRRFVTSSKD GDARIWDITL KKSIICLSGH TLAVTCVKWG GDGIIYTGSQ DCTIKMWETT QGKLIRELKG HGHWINSLAL STEYVLRTGA
301: FDHTGRQYPP NEEKQKALER YNKTKGDSPE RLVSGSDDFT MFLWEPSVSK QPKKRLTGHQ QLVNHVYFSP DGKWIASASF DKSVRLWNGI TGQFVTVFRG
401: HVGPVYQVSW SADSRLLLSG SKDSTLKIWE IRTKKLKQDL PGHADEVFAV DWSPDGEKVV SGGKDRVLKL WKG

Arabidopsis Description

NLE1NLE [Source:UniProtKB/TrEMBL;Acc:A0A178UNZ3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.