Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY05801 | Canola | cytosol | 97.84 | 36.06 |
| CDY05802 | Canola | mitochondrion | 96.22 | 30.96 |
| CDX90556 | Canola | cytosol | 8.11 | 3.12 |
| CDY09730 | Canola | cytosol | 8.11 | 3.12 |
| CDY34965 | Canola | cytosol | 6.49 | 2.55 |
| CDY01533 | Canola | plastid | 2.16 | 2.53 |
| CDY28352 | Canola | cytosol | 6.49 | 2.52 |
| CDX96351 | Canola | cytosol | 5.41 | 2.51 |
| CDX72834 | Canola | cytosol | 4.86 | 2.26 |
| CDY52843 | Canola | nucleus | 2.7 | 2.16 |
| CDX68298 | Canola | cytosol | 4.32 | 2.06 |
| CDY27046 | Canola | cytosol | 4.86 | 1.89 |
| CDX84790 | Canola | cytosol | 4.86 | 1.89 |
| CDY36678 | Canola | cytosol | 3.78 | 1.8 |
| CDX70097 | Canola | cytosol | 4.32 | 1.73 |
| CDY09645 | Canola | cytosol | 4.32 | 1.69 |
| CDX96156 | Canola | cytosol | 4.32 | 1.68 |
| CDX98931 | Canola | nucleus | 4.32 | 1.67 |
| CDX98392 | Canola | endoplasmic reticulum, extracellular | 2.7 | 1.13 |
| CDX77842 | Canola | cytosol, nucleus, peroxisome | 0.54 | 1.01 |
| CDY08014 | Canola | mitochondrion | 0.54 | 0.98 |
| CDX79802 | Canola | cytosol, golgi | 2.16 | 0.96 |
| CDY17912 | Canola | cytosol, golgi | 2.16 | 0.96 |
| CDX91118 | Canola | nucleus | 2.7 | 0.78 |
| CDX85646 | Canola | nucleus | 2.7 | 0.77 |
| CDX78524 | Canola | nucleus | 2.7 | 0.75 |
| CDX70506 | Canola | nucleus | 2.16 | 0.64 |
| CDY50395 | Canola | cytosol, extracellular, golgi, mitochondrion | 1.08 | 0.63 |
| CDX70436 | Canola | plastid | 0.54 | 0.6 |
| CDY34658 | Canola | mitochondrion | 2.16 | 0.52 |
| CDX88026 | Canola | cytosol | 2.16 | 0.48 |
| CDY60225 | Canola | cytosol | 2.16 | 0.48 |
| CDX81101 | Canola | cytosol | 2.16 | 0.48 |
| CDY34846 | Canola | nucleus | 2.16 | 0.44 |
| CDY15006 | Canola | cytosol | 2.16 | 0.39 |
| CDY52222 | Canola | cytosol | 2.16 | 0.36 |
| CDY03812 | Canola | cytosol | 2.16 | 0.36 |
| CDX84544 | Canola | cytosol | 0.54 | 0.33 |
| CDX86957 | Canola | cytosol | 0.54 | 0.32 |
| CDY00226 | Canola | cytosol, nucleus, plastid | 0.54 | 0.32 |
| CDX97287 | Canola | cytosol | 0.54 | 0.31 |
| CDX91316 | Canola | cytosol | 0.54 | 0.31 |
| CDX67810 | Canola | cytosol | 0.54 | 0.28 |
| PGSC0003DMT400056446 | Potato | cytosol | 0.54 | 0.18 |
| CDY27174 | Canola | cytosol | 0.0 | 0.0 |
| CDY08856 | Canola | cytosol | 0.0 | 0.0 |
| CDY44171 | Canola | cytosol | 0.0 | 0.0 |
| CDX80363 | Canola | cytosol | 0.0 | 0.0 |
| CDY54233 | Canola | golgi | 0.0 | 0.0 |
| CDX72090 | Canola | mitochondrion | 0.0 | 0.0 |
| PGSC0003DMT400056447 | Potato | extracellular | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY69403 | EnsemblPlantsGene:GSBRNA2T00087388001 | InterPro:Autophagy-rel_prot_16 | ncoils:Coil | PANTHER:PTHR19878 | PANTHER:PTHR19878:SF8 |
| PFAM:PF08614 | ProteinID:CDY69403 | ProteinID:CDY69403.1 | SEG:seg | UniParc:UPI0004EEEEDB | UniProt:A0A078JPA6 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaCnng63340DBnaCnng63340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JPA6]
Coordinates
chrLK039337:+:2798..4208
Molecular Weight (calculated)
21397.6 Da
IEP (calculated)
4.869
GRAVY (calculated)
-0.833
Length
185 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAIKDALRA LRKRHLLEEG AHGPAISALS KPMISQGSEW KEKTEKLEIE LQQCYKAQSR LSDQLVIEVA ESRTSKASLQ DKELLINDLE KDLSQTREEC
101: TRLQEELEEK TKTLDLLITE NKEVRSQLEE MTNRAQKAES ENKMLIDRWM LQKMQDAERL NEANALYEEM LAKLKANGLE NLARQ
101: TRLQEELEEK TKTLDLLITE NKEVRSQLEE MTNRAQKAES ENKMLIDRWM LQKMQDAERL NEANALYEEM LAKLKANGLE NLARQ
001: MVQEEKAMEA INDALRALRK RHLLEEGAHA PAISALSKPL ISQGSEWKEK TEKLETELQQ CYKAQSRLSE QLVIEVAESR TSKAILQEKE LLINDLQKEL
101: TQRREDCTRL QEELEEKTKT VDVLIAENLE IRSQLEEMTS RVQKAETENK MLIDRWMLQK MQDAERLNEA NDLYEEMLAK LKANGLETLA RQQVDGIVRR
201: NEDGTDHFVE STIPSTCANR IHAHEGGCGS IVFEYNSGTL FTGGQDRAVK MWDTNSGTLI KSLYGSLGNI LDMAVTHDNK SVIAATSSNN LFVWDVSSGR
301: VRHTLTGHTD KVCAVDVSKF SSRHVVSAAY DRTIKLWDLH KGYCTNTVLF TSNCNAICLS IDGLTVFSGH MDGNLRLWDI QTGKLLSEVA GHSSAVTSVS
401: LSRNGNRILT SGRDNVHNVF DTRTLEICGT LRASGNRLAS NWSRSCISPD DDYVAAGSAD GSVHVWSLSK GNIVSILKEQ TSPILCCSWS GIGKPLASAD
501: KNGYVCTWT
101: TQRREDCTRL QEELEEKTKT VDVLIAENLE IRSQLEEMTS RVQKAETENK MLIDRWMLQK MQDAERLNEA NDLYEEMLAK LKANGLETLA RQQVDGIVRR
201: NEDGTDHFVE STIPSTCANR IHAHEGGCGS IVFEYNSGTL FTGGQDRAVK MWDTNSGTLI KSLYGSLGNI LDMAVTHDNK SVIAATSSNN LFVWDVSSGR
301: VRHTLTGHTD KVCAVDVSKF SSRHVVSAAY DRTIKLWDLH KGYCTNTVLF TSNCNAICLS IDGLTVFSGH MDGNLRLWDI QTGKLLSEVA GHSSAVTSVS
401: LSRNGNRILT SGRDNVHNVF DTRTLEICGT LRASGNRLAS NWSRSCISPD DDYVAAGSAD GSVHVWSLSK GNIVSILKEQ TSPILCCSWS GIGKPLASAD
501: KNGYVCTWT
Arabidopsis Description
ATG16Autophagy-related protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q6NNP0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.