Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- peroxisome 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08014 | Canola | mitochondrion | 92.93 | 90.2 |
| CDY52843 | Canola | nucleus | 52.53 | 22.41 |
| CDX70097 | Canola | cytosol | 75.76 | 16.23 |
| CDX98931 | Canola | nucleus | 76.77 | 15.83 |
| CDY27046 | Canola | cytosol | 53.54 | 11.13 |
| CDX96156 | Canola | cytosol | 53.54 | 11.13 |
| CDX84790 | Canola | cytosol | 53.54 | 11.13 |
| CDY09645 | Canola | cytosol | 52.53 | 10.99 |
| CDY50395 | Canola | cytosol, extracellular, golgi, mitochondrion | 35.35 | 10.97 |
| CDX70436 | Canola | plastid | 18.18 | 10.78 |
| EES18812 | Sorghum | cytosol | 45.45 | 9.39 |
| TraesCS1A01G443600.1 | Wheat | cytosol | 44.44 | 9.26 |
| TraesCS1D01G451700.1 | Wheat | cytosol | 44.44 | 9.26 |
| TraesCS1B01G478100.1 | Wheat | cytosol | 44.44 | 9.24 |
| Os11t0594200-01 | Rice | cytosol | 44.44 | 9.17 |
| Os10t0104500-01 | Rice | cytosol | 44.44 | 9.17 |
| Zm00001d039211_P006 | Maize | cytosol | 45.45 | 9.05 |
| HORVU1Hr1G095080.1 | Barley | cytosol, plastid | 45.45 | 8.95 |
| CDY00226 | Canola | cytosol, nucleus, plastid | 18.18 | 5.71 |
| CDX91316 | Canola | cytosol | 18.18 | 5.52 |
| CDX97287 | Canola | cytosol | 18.18 | 5.52 |
| CDX86957 | Canola | cytosol | 16.16 | 5.13 |
| CDX72090 | Canola | mitochondrion | 16.16 | 4.79 |
| CDX67810 | Canola | cytosol | 17.17 | 4.74 |
| CDY08856 | Canola | cytosol | 14.14 | 4.71 |
| CDX84544 | Canola | cytosol | 14.14 | 4.67 |
| CDY05801 | Canola | cytosol | 21.21 | 4.18 |
| CDX79802 | Canola | cytosol, golgi | 17.17 | 4.1 |
| CDY17912 | Canola | cytosol, golgi | 17.17 | 4.08 |
| CDX98392 | Canola | endoplasmic reticulum, extracellular | 18.18 | 4.06 |
| CDY09730 | Canola | cytosol | 19.19 | 3.95 |
| CDX90556 | Canola | cytosol | 19.19 | 3.95 |
| CDY34965 | Canola | cytosol | 18.18 | 3.83 |
| CDY05802 | Canola | mitochondrion | 21.21 | 3.65 |
| CDY28352 | Canola | cytosol | 17.17 | 3.56 |
| CDY36678 | Canola | cytosol | 13.13 | 3.34 |
| CDX96351 | Canola | cytosol | 13.13 | 3.26 |
| CDX68298 | Canola | cytosol | 12.12 | 3.08 |
| CDX72834 | Canola | cytosol | 12.12 | 3.02 |
| CDX91118 | Canola | nucleus | 17.17 | 2.64 |
| CDX85646 | Canola | nucleus | 17.17 | 2.63 |
| CDX70506 | Canola | nucleus | 16.16 | 2.54 |
| CDX78524 | Canola | nucleus | 16.16 | 2.4 |
| CDY54233 | Canola | golgi | 4.04 | 2.15 |
| CDX88026 | Canola | cytosol | 14.14 | 1.69 |
| CDY60225 | Canola | cytosol | 14.14 | 1.68 |
| CDX81101 | Canola | cytosol | 14.14 | 1.66 |
| CDX80363 | Canola | cytosol | 14.14 | 1.65 |
| CDY34658 | Canola | mitochondrion | 10.1 | 1.31 |
| CDY44171 | Canola | cytosol | 2.02 | 1.29 |
| CDY52222 | Canola | cytosol | 14.14 | 1.25 |
| CDY03812 | Canola | cytosol | 14.14 | 1.25 |
| CDY15006 | Canola | cytosol | 12.12 | 1.18 |
| CDY34846 | Canola | nucleus | 10.1 | 1.1 |
| CDY01533 | Canola | plastid | 1.01 | 0.63 |
| CDY69403 | Canola | nucleus | 1.01 | 0.54 |
| CDY27174 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX77842 | EnsemblPlantsGene:GSBRNA2T00128954001 | Gene3D:2.130.10.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom |
| InterPro:WD40_repeat_dom_sf | PANTHER:PTHR19848 | PFAM:PF00400 | PFscan:PS50082 | PFscan:PS50294 | ProteinID:CDX77842 |
| ProteinID:CDX77842.1 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0004EE91ED | MapMan:35.1 | : |
Description
BnaC03g53770D
Coordinates
chrLK031813:-:457377..458379
Molecular Weight (calculated)
10877.9 Da
IEP (calculated)
8.502
GRAVY (calculated)
-0.448
Length
99 amino acids
Sequence
(BLAST)
(BLAST)
1: MFTCKRFEDI PCNKHSSCNV SSGYEHHVLA VAWSPDAKCL VSGDRNGKVC GWDPSKGELQ GKALAGHKKW ICGIAWEPAH LSYPSRRFVT CGKDGDAKI
001: MTMMDTDEGK TVMCLLTDPE GTHLGSAMYI PQKAGPLQLT QLVNRFLDNE EMLPYSFYVS DEELLVPVGT YLEKNKVSVE KVLTIVYQQQ AVFRIRPVNR
101: CSQTIAGHAE AVLCVSFSPD GKQLASGSGD TTVRLWDLYT ETPLFTCKGH KNWVLTVAWS PDGKHLVSGS KSGEICCWNP KKGELEGSPL TGHKKWITGI
201: SWEPVHLSSP CRRFVTSSKD GDARIWDITL KKSIICLSGH TLAVTCVKWG GDGIIYTGSQ DCTIKMWETT QGKLIRELKG HGHWINSLAL STEYVLRTGA
301: FDHTGRQYPP NEEKQKALER YNKTKGDSPE RLVSGSDDFT MFLWEPSVSK QPKKRLTGHQ QLVNHVYFSP DGKWIASASF DKSVRLWNGI TGQFVTVFRG
401: HVGPVYQVSW SADSRLLLSG SKDSTLKIWE IRTKKLKQDL PGHADEVFAV DWSPDGEKVV SGGKDRVLKL WKG
101: CSQTIAGHAE AVLCVSFSPD GKQLASGSGD TTVRLWDLYT ETPLFTCKGH KNWVLTVAWS PDGKHLVSGS KSGEICCWNP KKGELEGSPL TGHKKWITGI
201: SWEPVHLSSP CRRFVTSSKD GDARIWDITL KKSIICLSGH TLAVTCVKWG GDGIIYTGSQ DCTIKMWETT QGKLIRELKG HGHWINSLAL STEYVLRTGA
301: FDHTGRQYPP NEEKQKALER YNKTKGDSPE RLVSGSDDFT MFLWEPSVSK QPKKRLTGHQ QLVNHVYFSP DGKWIASASF DKSVRLWNGI TGQFVTVFRG
401: HVGPVYQVSW SADSRLLLSG SKDSTLKIWE IRTKKLKQDL PGHADEVFAV DWSPDGEKVV SGGKDRVLKL WKG
Arabidopsis Description
NLE1NLE [Source:UniProtKB/TrEMBL;Acc:A0A178UNZ3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.