Skip to main content
crop-pal logo
Canola
Search for another protein from :
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX71154
CDX77644
CDX85250
CDX86386
CDX87735
CDX90948
CDX93482
CDX94951
CDX97257
CDY01921
CDY02832
CDY03235
CDY04058
CDY20673
CDY31065
CDY32688
CDY33461
CDY35152
CDY43957
CDY44405
CDY47227
CDY53058
CDY61025
CDY64806
CDY68484
CDY69266
CDY69930
CDY70585

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G15900.1 CDX93482 AT1G09770.1 17575050
AT4G15900.1 CDX94951 AT1G09770.1 17575050
AT4G15900.1 CDY20673 AT1G09770.1 17575050
AT4G15900.1 CDY31065 AT1G09770.1 17575050
AT4G15900.1 CDY47227 AT1G09770.1 17575050
AT4G15900.1 CDY53058 AT1G09770.1 17575050
AT4G15900.1 CDX85250 AT3G29160.1 10220464
AT4G15900.1 CDX86386 AT3G29160.1 10220464
AT4G15900.1 CDY04058 AT3G29160.1 10220464
AT4G15900.1 CDY44405 AT3G29160.1 10220464
AT4G15900.1 CDX90948 AT4G02150.1 9765207
AT4G15900.1 CDX97257 AT4G02150.1 9765207
AT4G15900.1 CDY01921 AT4G02150.1 9765207
AT4G15900.1 CDY64806 AT4G02150.1 9765207
AT4G15900.1 CDY68484 AT4G05420.1 18223036
AT4G15900.1 CDY69266 AT4G05420.1 18223036
AT4G15900.1 CDY69930 AT4G05420.1 18223036
AT4G15900.1 CDY70585 AT4G05420.1 18223036
AT4G15900.1 CDX77644 AT5G46210.1 18223036
AT4G15900.1 CDX87735 AT5G46210.1 18223036
AT4G15900.1 CDY03235 AT5G46210.1 18223036
AT4G15900.1 CDY33461 AT5G46210.1 18223036
AT4G15900.1 CDY35152 AT5G46210.1 18223036
AT4G15900.1 CDY43957 AT5G46210.1 18223036
AT4G15900.1 CDX71154 AT5G58720.1 10220464
AT4G15900.1 CDY02832 AT5G58720.1 10220464
AT4G15900.1 CDY32688 AT5G58720.1 10220464
AT4G15900.1 CDY61025 AT5G58720.1 10220464
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY09730 Canola cytosol 99.79 99.79
Bra012753.1-P Field mustard cytosol 99.58 99.58
AT4G15900.1 Thale cress cytosol 93.56 92.59
CDX72090 Canola mitochondrion 62.79 90.42
CDY27174 Canola cytosol 27.44 86.27
CDY34965 Canola cytosol 79.42 81.28
CDY28352 Canola cytosol 80.04 80.71
KRH37088 Soybean nucleus 79.63 80.29
KRH12069 Soybean nucleus 79.42 80.25
VIT_05s0077g02310.t01 Wine grape cytosol 79.0 78.51
CDY44171 Canola cytosol 25.16 78.06
CDX84544 Canola cytosol 13.93 22.33
CDY08856 Canola cytosol 13.72 22.22
CDX70436 Canola plastid 7.69 22.16
CDX91316 Canola cytosol 14.35 21.17
CDX97287 Canola cytosol 14.35 21.17
CDY54233 Canola golgi 7.9 20.43
CDY52843 Canola nucleus 9.77 20.26
CDY08014 Canola mitochondrion 4.16 19.61
CDX86957 Canola cytosol 12.68 19.55
CDY00226 Canola cytosol, nucleus, plastid 12.68 19.37
CDX77842 Canola cytosol, nucleus, peroxisome 3.95 19.19
CDX67810 Canola cytosol 13.1 17.55
CDY09645 Canola cytosol 16.84 17.12
CDX72834 Canola cytosol 13.72 16.58
CDX96351 Canola cytosol 13.51 16.29
CDX96156 Canola cytosol 15.8 15.97
CDX79802 Canola cytosol, golgi 13.72 15.9
CDY17912 Canola cytosol, golgi 13.72 15.83
CDX84790 Canola cytosol 15.59 15.76
CDY27046 Canola cytosol 15.59 15.76
CDX68298 Canola cytosol 12.47 15.42
CDX98931 Canola nucleus 15.38 15.42
CDY36678 Canola cytosol 12.27 15.17
CDX70097 Canola cytosol 14.55 15.15
CDY50395 Canola cytosol, extracellular, golgi, mitochondrion 9.98 15.05
CDX98392 Canola endoplasmic reticulum, extracellular 13.1 14.22
CDY05801 Canola cytosol 13.72 13.15
CDX70506 Canola nucleus 15.18 11.61
CDX91118 Canola nucleus 15.38 11.49
CDY05802 Canola mitochondrion 13.72 11.48
CDX85646 Canola nucleus 15.38 11.44
CDX78524 Canola nucleus 15.59 11.23
CDY34658 Canola mitochondrion 16.22 10.18
CDX88026 Canola cytosol 15.38 8.93
CDX81101 Canola cytosol 15.38 8.8
CDY60225 Canola cytosol 15.18 8.74
CDX80363 Canola cytosol 14.97 8.47
CDY34846 Canola nucleus 16.01 8.44
CDY69403 Canola nucleus 3.12 8.11
CDY52222 Canola cytosol 17.26 7.4
CDY03812 Canola cytosol 17.26 7.39
CDY01533 Canola plastid 2.29 6.96
CDY15006 Canola cytosol 14.55 6.9
Protein Annotations
MapMan:16.4.5.1.3Gene3D:2.130.10.10EnsemblPlants:CDX90556ProteinID:CDX90556ProteinID:CDX90556.1InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674GO:GO:0005488GO:GO:0005515EnsemblPlantsGene:GSBRNA2T00151190001InterPro:IPR001680InterPro:IPR015943
InterPro:IPR017986PFAM:PF00400PRINTS:PR00320ScanProsite:PS00678PFscan:PS50082PFscan:PS50294
PANTHER:PTHR19923SMART:SM00320SUPFAM:SSF50978UniParc:UPI0004EE350EInterPro:WD40/YVTN_repeat-like_dom_sfInterPro:WD40_repeat
InterPro:WD40_repeat_CSInterPro:WD40_repeat_domInterPro:WD40_repeat_dom_sfSEG:seg::
Description
BnaA03g42250D
Coordinates
chrLK031863:-:833206..836804
Molecular Weight (calculated)
53383.4 Da
IEP (calculated)
9.174
GRAVY (calculated)
-0.484
Length
481 amino acids
Sequence
(BLAST)
001: MPAATTEAES IEPQSLKKLS IKSLKRALDL FSPVHGQFPP PDAEAKKIRL SHKMKVAFGG VEPVSQPPRQ PDRGNEQTGT SSALALTGPE GSKSTQKGVT
101: ENALVVGPTF QPKGLNSIGT SGKSTTIIPA NVSSYERNFS TSALMERIPS RWPRPEWHAP WKNYRVIQGH LGWVRSVAFD PSNEWFCTGS ADRTIKIWDV
201: ATGVLKLTLT GHIEQVRGLA VSNRHTYMFS AGDDKQVKCW DLEQNKVIRS YHGHLSGVYC LALHPTLDVL LTGGRDSVCR VWDIRTKMQI FALTGHDNTV
301: CSVFTRPTDP QVVTGSHDTT IKFWDLRYGK TMTTLTHHKK SVRAMTLHPK ENAFASASAD NTKKFSLPKG EFCHNMLSQQ KTIINAMAVN EDGVMVTGGD
401: NGSIWFWDWK SGHSFQQSET IVQPGSLESE AGIYAACYDQ TGSRLVTCEA DKTIKMWKED ENATPETHPV NFKPPKEIRR F
Best Arabidopsis Sequence Match ( AT4G15900.1 )
(BLAST)
001: MPAPTTEIEP IEAQSLKKLS LKSLKRSLEL FSPVHGQFPP PDPEAKQIRL SHKMKVAFGG VEPVVSQPPR QPDRINEQPG PSNALSLAAP EGSKSTQKGA
101: TESAIVVGPT LLRPILPKGL NYTGSSGKST TIIPANVSSY QRNLSTAALM ERIPSRWPRP EWHAPWKNYR VIQGHLGWVR SVAFDPSNEW FCTGSADRTI
201: KIWDVATGVL KLTLTGHIEQ VRGLAVSNRH TYMFSAGDDK QVKCWDLEQN KVIRSYHGHL SGVYCLALHP TLDVLLTGGR DSVCRVWDIR TKMQIFALSG
301: HDNTVCSVFT RPTDPQVVTG SHDTTIKFWD LRYGKTMSTL THHKKSVRAM TLHPKENAFA SASADNTKKF SLPKGEFCHN MLSQQKTIIN AMAVNEDGVM
401: VTGGDNGSIW FWDWKSGHSF QQSETIVQPG SLESEAGIYA ACYDNTGSRL VTCEADKTIK MWKEDENATP ETHPINFKPP KEIRRF
Arabidopsis Description
PRL1Protein pleiotropic regulatory locus 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42384]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.