Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY68484 | Canola | cytosol, endoplasmic reticulum, vacuole | 97.26 | 99.63 |
| KRH43086 | Soybean | nucleus | 33.21 | 89.66 |
| KRH59212 | Soybean | cytosol, nucleus | 80.66 | 82.93 |
| KRH25071 | Soybean | nucleus | 83.21 | 76.38 |
| HORVU7Hr1G056610.1 | Barley | cytosol | 18.98 | 52.26 |
| Bra029577.1-P | Field mustard | nucleus, peroxisome, plastid | 99.64 | 50.28 |
| AT4G05420.1 | Thale cress | cytosol, nucleus, peroxisome | 96.35 | 48.53 |
| PGSC0003DMT400009595 | Potato | nucleus | 22.08 | 46.36 |
| VIT_10s0003g04360.t01 | Wine grape | cytosol, nucleus, plasma membrane | 89.23 | 44.9 |
| Solyc02g021650.2.1 | Tomato | nucleus | 87.41 | 43.74 |
| CDY57060 | Canola | cytosol, nucleus, plasma membrane | 87.96 | 43.7 |
| GSMUA_Achr8P07200_001 | Banana | cytosol, nucleus, plasma membrane | 85.77 | 43.16 |
| CDX76416 | Canola | cytosol | 87.04 | 42.29 |
| KXG22678 | Sorghum | nucleus | 80.29 | 40.4 |
| TraesCS1B01G473400.1 | Wheat | nucleus | 79.93 | 40.18 |
| Zm00001d039165_P046 | Maize | nucleus | 80.11 | 40.16 |
| TraesCSU01G002300.1 | Wheat | golgi, plastid | 79.74 | 40.09 |
| TraesCS1D01G445700.1 | Wheat | unclear | 79.38 | 39.91 |
| Zm00001d009745_P023 | Maize | cytosol, nucleus, plasma membrane, plastid | 78.47 | 39.13 |
| HORVU1Hr1G094530.1 | Barley | nucleus, plastid | 80.11 | 38.37 |
| TraesCS3B01G240600.1 | Wheat | cytosol | 64.42 | 34.14 |
| TraesCS3A01G210100.2 | Wheat | nucleus | 64.23 | 32.38 |
| HORVU3Hr1G050820.11 | Barley | plastid | 64.6 | 31.27 |
| CDY36309 | Canola | cytosol, nucleus, plastid | 22.63 | 10.5 |
| CDY36325 | Canola | nucleus, plastid, vacuole | 22.63 | 10.45 |
| CDY54326 | Canola | cytosol | 4.2 | 10.04 |
| CDX73841 | Canola | nucleus, plastid | 17.15 | 7.01 |
| CDY00750 | Canola | nucleus | 16.97 | 6.95 |
| CDY08477 | Canola | nucleus | 15.88 | 6.4 |
| CDY01074 | Canola | nucleus | 15.69 | 6.33 |
| CDY50606 | Canola | golgi, mitochondrion, plasma membrane | 0.36 | 0.63 |
| KRH59213 | Soybean | cytosol, plasma membrane, plastid | 0.0 | 0.0 |
| CDY69930 | Canola | plastid | 0.0 | 0.0 |
| HORVU7Hr1G056620.1 | Barley | cytosol | 0.0 | 0.0 |
| CDY70585 | Canola | plastid | 0.0 | 0.0 |
Protein Annotations
| MapMan:14.6.1.3.1 | MapMan:19.2.2.8.3.2 | Gene3D:2.130.10.10 | MapMan:26.1.1.3.2 | Gene3D:3.30.980.30 | GO:A0A078JUN1 |
| UniProt:A0A078JUN1 | EnsemblPlants:CDY69266 | ProteinID:CDY69266 | ProteinID:CDY69266.1 | InterPro:Cleavage/polyA-sp_fac_asu_C | InterPro:DDB1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00086122001 | InterPro:IPR015943 | PFAM:PF03178 |
| PANTHER:PTHR10644 | PANTHER:PTHR10644:SF3 | SUPFAM:SSF50978 | UniParc:UPI0004EEA758 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat_dom_sf |
Description
BnaCnng62720DBnaCnng62720D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JUN1]
Coordinates
chrLK038993:+:3..2190
Molecular Weight (calculated)
61683.7 Da
IEP (calculated)
5.131
GRAVY (calculated)
-0.215
Length
548 amino acids
Sequence
(BLAST)
(BLAST)
001: GDNPNYSQLA SVGMWTDISV RIFSLPELTL ITKEQLGGEI IPRSVLLCSF EGISYLLCAL GDGHLLNFQL DTTTGQLKDR KKVSLGTQPI TLRTFSSKSA
101: THVFAASDRP TVIYSSNKKL LYSNVNLKEV SYMCPFNSAA FPDSLAIARE GELTIGTIDD IQKLHIRTIP LGEHARRICH QEQTRTFGIC SLGNQTNAEE
201: SEMHFVRLLD DQSFEFMSTY PLDAFEYACS ILSCSFTDDK NVYYCVGTAY VLPEENEPTK GRILVFIVED AKLQLIAEKE TKGAVYSLNA FNGKLLAAIN
301: QKIQLYKWML RDDGTRELQS ECGHHGHILA LYVQTRGDFI VVGDLMKSIS LLIYKHEEGA IEERARDYNA NWMSAVEILD DDTYLGAENN FNLLTVKKNS
401: EGATDEERGR LEVVGEYHLG EFVNRFCHGS LVMRLPDSEI GQIPTVIFGT VNGMIGVIAS LPQEQYVFLE KLQSSLRKVI KGVGGLSHEQ WRSFNNEKRT
501: VEARNFLDGD LIESFLDLSR NKMEEISKSM NVQVEELCKK VEELTRLH
101: THVFAASDRP TVIYSSNKKL LYSNVNLKEV SYMCPFNSAA FPDSLAIARE GELTIGTIDD IQKLHIRTIP LGEHARRICH QEQTRTFGIC SLGNQTNAEE
201: SEMHFVRLLD DQSFEFMSTY PLDAFEYACS ILSCSFTDDK NVYYCVGTAY VLPEENEPTK GRILVFIVED AKLQLIAEKE TKGAVYSLNA FNGKLLAAIN
301: QKIQLYKWML RDDGTRELQS ECGHHGHILA LYVQTRGDFI VVGDLMKSIS LLIYKHEEGA IEERARDYNA NWMSAVEILD DDTYLGAENN FNLLTVKKNS
401: EGATDEERGR LEVVGEYHLG EFVNRFCHGS LVMRLPDSEI GQIPTVIFGT VNGMIGVIAS LPQEQYVFLE KLQSSLRKVI KGVGGLSHEQ WRSFNNEKRT
501: VEARNFLDGD LIESFLDLSR NKMEEISKSM NVQVEELCKK VEELTRLH
0001: MSSWNYVVTA HKPTSVTHSC VGNFTSPQEL NLIVAKCTRI EIHLLTPQGL QPMLDVPIYG RIATLELFRP HGEAQDFLFI ATERYKFCVL QWDPESSELI
0101: TRAMGDVSDR IGRPTDNGQV IPFDNKGQLK EAFNIRLEEL QVLDIKFLFG CAKPTIAVLY QDNKDARHVK TYEVSLKDKD FVEGPWSQNS LDNGADLLIP
0201: VPPPLCGVLI IGEETIVYCS ASAFKAIPIR PSITKAYGRV DVDGSRYLLG DHAGMIHLLV ITHEKEKVTG LKIELLGETS IASTISYLDN AVVFVGSSYG
0301: DSQLVKLNLH PDAKGSYVEV LERYINLGPI VDFCVVDLER QGQGQVVTCS GAFKDGSLRV VRNGIGINEQ ASVELQGIKG MWSLKSSIDE AFDTFLVVSF
0401: ISETRILAMN LEDELEETEI EGFLSQVQTL FCHDAVYNQL VQVTSNSVRL VSSTTRELRD EWHAPAGFTV NVATANASQV LLATGGGHLV YLEIGDGKLT
0501: EVQHALLEYE VSCLDINPIG DNPNYSQLAA VGMWTDISVR IFSLPELTLI TKEQLGGEII PRSVLLCAFE GISYLLCALG DGHLLNFQMD TTTGQLKDRK
0601: KVSLGTQPIT LRTFSSKSAT HVFAASDRPT VIYSSNKKLL YSNVNLKEVS HMCPFNSAAF PDSLAIAREG ELTIGTIDDI QKLHIRTIPL GEHARRICHQ
0701: EQTRTFGICS LGNQSNSEES EMHFVRLLDD QTFEFMSTYP LDSFEYGCSI LSCSFTEDKN VYYCVGTAYV LPEENEPTKG RILVFIVEDG RLQLIAEKET
0801: KGAVYSLNAF NGKLLAAINQ KIQLYKWMLR DDGTRELQSE CGHHGHILAL YVQTRGDFIV VGDLMKSISL LLYKHEEGAI EERARDYNAN WMSAVEILDD
0901: DIYLGAENNF NLLTVKKNSE GATDEERGRL EVVGEYHLGE FVNRFRHGSL VMRLPDSEIG QIPTVIFGTV NGVIGVIASL PQEQYTFLEK LQSSLRKVIK
1001: GVGGLSHEQW RSFNNEKRTA EARNFLDGDL IESFLDLSRN KMEDISKSMN VQVEELCKRV EELTRLH
0101: TRAMGDVSDR IGRPTDNGQV IPFDNKGQLK EAFNIRLEEL QVLDIKFLFG CAKPTIAVLY QDNKDARHVK TYEVSLKDKD FVEGPWSQNS LDNGADLLIP
0201: VPPPLCGVLI IGEETIVYCS ASAFKAIPIR PSITKAYGRV DVDGSRYLLG DHAGMIHLLV ITHEKEKVTG LKIELLGETS IASTISYLDN AVVFVGSSYG
0301: DSQLVKLNLH PDAKGSYVEV LERYINLGPI VDFCVVDLER QGQGQVVTCS GAFKDGSLRV VRNGIGINEQ ASVELQGIKG MWSLKSSIDE AFDTFLVVSF
0401: ISETRILAMN LEDELEETEI EGFLSQVQTL FCHDAVYNQL VQVTSNSVRL VSSTTRELRD EWHAPAGFTV NVATANASQV LLATGGGHLV YLEIGDGKLT
0501: EVQHALLEYE VSCLDINPIG DNPNYSQLAA VGMWTDISVR IFSLPELTLI TKEQLGGEII PRSVLLCAFE GISYLLCALG DGHLLNFQMD TTTGQLKDRK
0601: KVSLGTQPIT LRTFSSKSAT HVFAASDRPT VIYSSNKKLL YSNVNLKEVS HMCPFNSAAF PDSLAIAREG ELTIGTIDDI QKLHIRTIPL GEHARRICHQ
0701: EQTRTFGICS LGNQSNSEES EMHFVRLLDD QTFEFMSTYP LDSFEYGCSI LSCSFTEDKN VYYCVGTAYV LPEENEPTKG RILVFIVEDG RLQLIAEKET
0801: KGAVYSLNAF NGKLLAAINQ KIQLYKWMLR DDGTRELQSE CGHHGHILAL YVQTRGDFIV VGDLMKSISL LLYKHEEGAI EERARDYNAN WMSAVEILDD
0901: DIYLGAENNF NLLTVKKNSE GATDEERGRL EVVGEYHLGE FVNRFRHGSL VMRLPDSEIG QIPTVIFGTV NGVIGVIASL PQEQYTFLEK LQSSLRKVIK
1001: GVGGLSHEQW RSFNNEKRTA EARNFLDGDL IESFLDLSRN KMEDISKSMN VQVEELCKRV EELTRLH
Arabidopsis Description
DDB1ADDB1A [Source:UniProtKB/TrEMBL;Acc:A0A178UYD4]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.