CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY68484
CDY69266
CDY69930
CDY70585

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G65030.1	CDY68484	AT4G05420.1	18223036
AT1G65030.1	CDY69266	AT4G05420.1	18223036
AT1G65030.1	CDY69930	AT4G05420.1	18223036
AT1G65030.1	CDY70585	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY01817	Canola	cytosol	79.87	36.92
CDX96086	Canola	cytosol	78.62	36.34
CDY64887	Canola	cytosol	75.47	35.09
CDY12650	Canola	cytosol	75.47	34.88
AT1G65030.1	Thale cress	cytosol, nucleus, plastid	67.92	31.3
VIT_08s0007g00490.t01	Wine grape	mitochondrion, plastid	51.57	24.26
KRH37745	Soybean	nucleus	47.17	23.51
Os12t0615900-01	Rice	nucleus	36.48	23.2
Solyc02g078830.2.1	Tomato	nucleus	49.06	23.15
PGSC0003DMT400057752	Potato	cytosol	47.8	22.55
KRH12797	Soybean	nucleus	47.17	21.61
GSMUA_Achr4P31530_001	Banana	cytosol	45.28	20.51
TraesCS5D01G041900.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	38.36	19.0
TraesCS5B01G033700.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	37.74	18.63
TraesCS5A01G033600.1	Wheat	mitochondrion, plastid	37.74	18.58
HORVU0Hr1G027960.1	Barley	plastid	36.48	17.47
EES16386	Sorghum	plastid	35.85	17.27
HORVU5Hr1G008820.2	Barley	mitochondrion	37.11	16.95
Zm00001d022257_P002	Maize	plastid	35.85	16.57

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.2	EnsemblPlants:CDY01885	ProteinID:CDY01885	ProteinID:CDY01885.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00113073001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44675	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI0004EE7E23	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf

Description

BnaC06g29250D

Coordinates

chrLK031929:+:1048840..1049808

Molecular Weight (calculated)

17296.6 Da

IEP (calculated)

9.732

GRAVY (calculated)

-0.369

Length

159 amino acids

Sequence
(BLAST)

001: MGIYACVLFS KQISSSCPSF IYKPTLKATH TFVTIKNHSG TLFTAGEDRA ITAWDTNRGK LAYSIQDAHP ARIKGVVTLT KNDSDGASED PYLVASASSD
101: GIIRVWDMRM AAKENAKPLA ETNTKSRLTC LAGSALKSMR RPQIGNQKAQ KLEEGLNTE

Best Arabidopsis Sequence Match ( AT1G65030.1 )
(BLAST)

001: MSIIAGSYER FIWGFKLKPT KHDAESQTLT LSPLFSYPSH ISPITTVACS GPAAASGGSD DTIHLYDLPS ASSLGSLLDH NHAASITALS FYTPSSLSFP
101: RNLISAAADG SVAIFDTDPF VLLKSFRPHK KAVNDLAIHP SGKLALAVYR DEFFAMLNLV RGKRSFCCRL GHEASLVKFD PSGERFYMVV SNKVGVHQSE
201: DAKLLLELEN PSRKRILCAT PGESGTLFTG GEDRAITAWD TNSGKLAYSI EDAHPARIKG IVVLTRNDSD GSLEDPYLIG SASSDGIIRV WDVRMAAKEN
301: TKPLAETNTK SRLTCLAGSA LKSMRRPQIG KQEPQKVDEE HEDSE

Arabidopsis Description

At1g65030 [Source:UniProtKB/TrEMBL;Acc:Q5XEV4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.