CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 4
plastid 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH25071
KRH43086
KRH59212
KRH59213

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G65030.1	KRH25071	AT4G05420.1	18223036
AT1G65030.1	KRH43086	AT4G05420.1	18223036
AT1G65030.1	KRH59212	AT4G05420.1	18223036
AT1G65030.1	KRH59213	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH12797	Soybean	nucleus	94.98	87.32
VIT_08s0007g00490.t01	Wine grape	mitochondrion, plastid	66.14	62.43
AT1G65030.1	Thale cress	cytosol, nucleus, plastid	63.32	58.55
CDY64887	Canola	cytosol	62.38	58.19
CDY12650	Canola	cytosol	62.7	58.14
Bra004232.1-P	Field mustard	cytosol	62.07	57.56
CDX96086	Canola	cytosol	62.07	57.56
CDY01817	Canola	cytosol	62.07	57.56
Solyc02g078830.2.1	Tomato	nucleus	60.19	56.97
PGSC0003DMT400057752	Potato	cytosol	59.56	56.38
TraesCS5D01G041900.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	53.29	52.96
TraesCS5B01G033700.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	53.29	52.8
TraesCS5A01G033600.1	Wheat	mitochondrion, plastid	52.98	52.32
GSMUA_Achr4P31530_001	Banana	cytosol	55.8	50.71
Os12t0615900-01	Rice	nucleus	39.19	50.0
EES16386	Sorghum	plastid	50.47	48.79
CDY01885	Canola	plastid	23.51	47.17
HORVU5Hr1G008820.2	Barley	mitochondrion	51.41	47.13
Zm00001d022257_P002	Maize	plastid	49.53	45.93
Bra033995.1-P	Field mustard	cytosol	50.16	41.45
HORVU0Hr1G027960.1	Barley	plastid	36.68	35.24

Protein Annotations

EntrezGene:100782530	Gene3D:2.130.10.10	MapMan:35.2	EMBL:ACUP02005499	InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_09G086200
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1L241	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	EnsemblPlants:KRH37745	ProteinID:KRH37745	ProteinID:KRH37745.1	PFAM:PF00400	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44675	InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320
SUPFAM:SSF50998	UniParc:UPI0002337E76	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom

Description

hypothetical protein

Coordinates

chr9:-:10627603..10631955

Molecular Weight (calculated)

34352.8 Da

IEP (calculated)

7.553

GRAVY (calculated)

-0.058

Length

319 amino acids

Sequence
(BLAST)

001: MSLVAGSYEK FIWGFTLRSQ SQTLTPLFSY PSHLSSIKSV AISGPVVASG GEDDTIQLYD LAAAASLGSL HTHSATVTAL SFYAPPHLPF PRNLVSADAA
101: GNVSIFDADG FVHLTTISVH RNAAINDLAL HPSGQRALTV ARDDCLAVVN LVRGRRNCCL RLGKEASLVK FDATGDQFFM VVKEKVSVHQ TEDARILFEF
201: ECPKPVLCAT PAKNGLLYTG GEDRNITAWD IKTGKVAYCL EEAHTARVKG IVALTDSDGA TGDDNPYLVA SASSDGIIRV WDVRMAAREK PLTEHNTRSR
301: LTCLAGSSLK FKRPQDGKS

Best Arabidopsis Sequence Match ( AT1G65030.1 )
(BLAST)

001: MSIIAGSYER FIWGFKLKPT KHDAESQTLT LSPLFSYPSH ISPITTVACS GPAAASGGSD DTIHLYDLPS ASSLGSLLDH NHAASITALS FYTPSSLSFP
101: RNLISAAADG SVAIFDTDPF VLLKSFRPHK KAVNDLAIHP SGKLALAVYR DEFFAMLNLV RGKRSFCCRL GHEASLVKFD PSGERFYMVV SNKVGVHQSE
201: DAKLLLELEN PSRKRILCAT PGESGTLFTG GEDRAITAWD TNSGKLAYSI EDAHPARIKG IVVLTRNDSD GSLEDPYLIG SASSDGIIRV WDVRMAAKEN
301: TKPLAETNTK SRLTCLAGSA LKSMRRPQIG KQEPQKVDEE HEDSE

Arabidopsis Description

At1g65030 [Source:UniProtKB/TrEMBL;Acc:Q5XEV4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.