Factsheet for PGSC0003DMT400057752

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400009595

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G65030.1	PGSC0003DMT400009595	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g078830.2.1	Tomato	nucleus	98.22	98.22
VIT_08s0007g00490.t01	Wine grape	mitochondrion, plastid	67.95	67.75
AT1G65030.1	Thale cress	cytosol, nucleus, plastid	62.02	60.58
CDY01817	Canola	cytosol	61.72	60.47
CDY64887	Canola	cytosol	61.13	60.23
Bra004232.1-P	Field mustard	cytosol	61.42	60.17
CDX96086	Canola	cytosol	61.42	60.17
CDY12650	Canola	cytosol	60.83	59.59
KRH37745	Soybean	nucleus	56.38	59.56
KRH12797	Soybean	nucleus	56.97	55.33
GSMUA_Achr4P31530_001	Banana	cytosol	56.08	53.85
TraesCS5D01G041900.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	50.45	52.96
TraesCS5B01G033700.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	49.55	51.86
TraesCS5A01G033600.1	Wheat	mitochondrion, plastid	49.26	51.39
Os12t0615900-01	Rice	nucleus	36.8	49.6
EES16386	Sorghum	plastid	47.77	48.79
CDY01885	Canola	plastid	22.55	47.8
HORVU5Hr1G008820.2	Barley	mitochondrion	48.37	46.84
Zm00001d022257_P002	Maize	plastid	47.48	46.51
Bra033995.1-P	Field mustard	cytosol	49.26	43.01
HORVU0Hr1G027960.1	Barley	plastid	34.12	34.64

Protein Annotations

EntrezGene:102580729	Gene3D:2.130.10.10	MapMan:35.2	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0080008	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M1C1L0	PFAM:PF00400
EnsemblPlantsGene:PGSC0003DMG400022420	PGSC:PGSC0003DMG400022420	EnsemblPlants:PGSC0003DMT400057752	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR44675	InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320	SUPFAM:SSF50998	UniParc:UPI000296D1AD
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	RefSeq:XP_006347093.1	SEG:seg

Description

Pak inhibitor skb15 [Source:PGSC_GENE;Acc:PGSC0003DMG400022420]

Coordinates

chr2:+:34503266..34507214

Molecular Weight (calculated)

36632.4 Da

IEP (calculated)

7.343

GRAVY (calculated)

-0.232

Length

337 amino acids

Sequence
(BLAST)

001: MSLIAGSYER FIWGFKLRST KNDQNYELTP LFSFPSHLSP IKCTAVAGSA AVSGGADDTI KIYDLSTCSE IGSLHHSATV TSLSFFTPSS FSFPRNLIAA
101: SEDGSVSIYD ADPFVHLKSV KVHRKAVNSI CIHPSGRLAL TVGRDECMAM VNLVRGRRSF YCRLGKEASL VNFSDGGEKF FMVMDDKISV HESEDAKTIL
201: ELDSKKRVLC ATSGMHGILF TGGEDRSIKA WDITSGKIAY SIEDAHSTRV KGIVVLHKNS DGDAEDHQHI VASASSDGVI RVWDVRMTNK DKPNPLAEVN
301: TKSRLTCLAG SSIKSMKRPE VGNTTSNGQQ LDAGEES

Best Arabidopsis Sequence Match ( AT1G65030.1 )
(BLAST)

001: MSIIAGSYER FIWGFKLKPT KHDAESQTLT LSPLFSYPSH ISPITTVACS GPAAASGGSD DTIHLYDLPS ASSLGSLLDH NHAASITALS FYTPSSLSFP
101: RNLISAAADG SVAIFDTDPF VLLKSFRPHK KAVNDLAIHP SGKLALAVYR DEFFAMLNLV RGKRSFCCRL GHEASLVKFD PSGERFYMVV SNKVGVHQSE
201: DAKLLLELEN PSRKRILCAT PGESGTLFTG GEDRAITAWD TNSGKLAYSI EDAHPARIKG IVVLTRNDSD GSLEDPYLIG SASSDGIIRV WDVRMAAKEN
301: TKPLAETNTK SRLTCLAGSA LKSMRRPQIG KQEPQKVDEE HEDSE

Arabidopsis Description

At1g65030 [Source:UniProtKB/TrEMBL;Acc:Q5XEV4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.