Factsheet for PGSC0003DMT400009595

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 3
nucleus 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000871
PGSC0003DMT400001906
PGSC0003DMT400005774
PGSC0003DMT400005776
PGSC0003DMT400005780
PGSC0003DMT400015787
PGSC0003DMT400016081
PGSC0003DMT400023040
PGSC0003DMT400024304
PGSC0003DMT400030158
PGSC0003DMT400031270
PGSC0003DMT400039034
PGSC0003DMT400039039
PGSC0003DMT400041481
PGSC0003DMT400056773
PGSC0003DMT400057752
PGSC0003DMT400061016
PGSC0003DMT400065641
PGSC0003DMT400080769

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G05420.1	PGSC0003DMT400030158	AT1G19750.1	20622147
AT4G05420.1	PGSC0003DMT400057752	AT1G65030.1	18223036
AT4G05420.1	PGSC0003DMT400016081	AT4G03020.1	21798944
AT4G05420.1	PGSC0003DMT400080769	AT4G10180.1	16792691
AT4G05420.1	PGSC0003DMT400005774	AT4G15730.1	21798944
AT4G05420.1	PGSC0003DMT400005776	AT4G15730.1	21798944
AT4G05420.1	PGSC0003DMT400005780	AT4G15730.1	21798944
AT4G05420.1	PGSC0003DMT400031270	AT4G15730.1	21798944
AT4G05420.1	PGSC0003DMT400039034	AT4G15730.1	21798944
AT4G05420.1	PGSC0003DMT400039039	AT4G15730.1	21798944
AT4G05420.1	PGSC0003DMT400065641	AT4G15730.1	21798944
AT4G05420.1	PGSC0003DMT400023040	AT4G15900.1	18223036
AT4G05420.1	PGSC0003DMT400024304	AT4G28450.1	18223036
AT4G05420.1	PGSC0003DMT400000871	AT4G29830.1	18223036
AT4G05420.1	PGSC0003DMT400041481	AT4G29830.1	18223036
AT4G05420.1	PGSC0003DMT400001906	AT4G34460.1	18223036
AT4G05420.1	PGSC0003DMT400015787	AT4G35050.1	18223036
AT4G05420.1	PGSC0003DMT400061016	AT5G58230.1	21240189
AT4G05420.1	PGSC0003DMT400056773	AT5G58760.1	16792691
AT4G05420.1	PGSC0003DMT400056773	AT5G58760.1	18551167
AT4G05420.1	PGSC0003DMT400056773	AT5G58760.1	21240189

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH59212	Soybean	cytosol, nucleus	46.36	22.7
CDY68484	Canola	cytosol, endoplasmic reticulum, vacuole	45.98	22.43
CDY69266	Canola	nucleus	46.36	22.08
KRH25071	Soybean	nucleus	44.83	19.6
HORVU7Hr1G056610.1	Barley	cytosol	9.2	12.06
Solyc02g021650.2.1	Tomato	nucleus	49.04	11.69
GSMUA_Achr8P07200_001	Banana	cytosol, nucleus, plasma membrane	47.89	11.48
VIT_10s0003g04360.t01	Wine grape	cytosol, nucleus, plasma membrane	47.13	11.29
Bra029577.1-P	Field mustard	nucleus, peroxisome, plastid	45.98	11.05
AT4G05420.1	Thale cress	cytosol, nucleus, peroxisome	45.98	11.03
KXG22678	Sorghum	nucleus	45.98	11.02
Zm00001d039165_P046	Maize	nucleus	45.98	10.98
Zm00001d009745_P023	Maize	cytosol, nucleus, plasma membrane, plastid	45.98	10.92
CDY57060	Canola	cytosol, nucleus, plasma membrane	45.98	10.88
TraesCSU01G002300.1	Wheat	golgi, plastid	45.21	10.83
TraesCS1D01G445700.1	Wheat	unclear	45.21	10.83
TraesCS1B01G473400.1	Wheat	nucleus	45.21	10.83
TraesCS3B01G240600.1	Wheat	cytosol	42.53	10.73
CDX76416	Canola	cytosol	45.98	10.64
AT4G21100.1	Thale cress	nucleus	43.68	10.48
HORVU1Hr1G094530.1	Barley	nucleus, plastid	45.21	10.31
TraesCS3A01G210100.2	Wheat	nucleus	41.38	9.94
HORVU3Hr1G050820.11	Barley	plastid	42.53	9.81
Bra020884.1-P	Field mustard	cytosol	45.98	9.36
PGSC0003DMT400077607	Potato	nucleus	19.92	4.29
KRH43086	Soybean	nucleus	3.07	3.94
CDY54326	Canola	cytosol	2.3	2.62
CDY50606	Canola	golgi, mitochondrion, plasma membrane	0.38	0.32
KRH59213	Soybean	cytosol, plasma membrane, plastid	0.0	0.0
HORVU7Hr1G056620.1	Barley	cytosol	0.0	0.0
CDY70585	Canola	plastid	0.0	0.0
CDY69930	Canola	plastid	0.0	0.0

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:Cleavage/polyA-sp_fac_asu_C	InterPro:DDB1	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	InterPro:IPR015943	UniProt:M0ZWK6	PFAM:PF03178	EnsemblPlantsGene:PGSC0003DMG400003744	PGSC:PGSC0003DMG400003744
EnsemblPlants:PGSC0003DMT400009595	PANTHER:PTHR10644	PANTHER:PTHR10644:SF3	InterPro:Quinoprotein_ADH-like_supfam	SUPFAM:SSF50998	UniParc:UPI000296014F
InterPro:WD40/YVTN_repeat-like_dom_sf	SEG:seg	:	:	:	:

Description

DNA damage-binding protein 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400003744]

Coordinates

chr4:-:70069090..70070630

Molecular Weight (calculated)

29416.8 Da

IEP (calculated)

8.533

GRAVY (calculated)

0.000

Length

261 amino acids

Sequence
(BLAST)

001: MVTGQLKGSE LLGKKKLSLG TQPVTLCAFL FNEATRIFAS SNTSMAIYNS IFCCEVNNLN DVRLMSPYRV EAFPNSALHI SHQEQSHTIA ICTVKRDDKD
101: DMVSLVQLFD DQTCHRKWTY KLKEFEHSCS LISCSFSEDD NVYYCVGTAY LKLDANECTK GRILVLQVVQ GSKLHLVAEM ETDGAVYCLN AFTGKLLAAI
201: NQNIKLYKWA SLKSCRGREL KPGCLYWGSV LSRFIQTHGD AMRSISLLRL KVLVVIIYLK K

Best Arabidopsis Sequence Match ( AT4G05420.2 )
(BLAST)

0001: MSSWNYVVTA HKPTSVTHSC VGNFTSPQEL NLIVAKCTRI EIHLLTPQGL QPMLDVPIYG RIATLELFRP HGEAQDFLFI ATERYKFCVL QWDPESSELI
0101: TRAMGDVSDR IGRPTDNGQV IPFDNKGQLK EAFNIRLEEL QVLDIKFLFG CAKPTIAVLY QDNKDARHVK TYEVSLKDKD FVEGPWSQNS LDNGADLLIP
0201: VPPPLCGVLI IGEETIVYCS ASAFKAIPIR PSITKAYGRV DVDGSRYLLG DHAGMIHLLV ITHEKEKVTG LKIELLGETS IASTISYLDN AVVFVGSSYG
0301: DSQLVKLNLH PDAKGSYVEV LERYINLGPI VDFCVVDLER QGQGQVVTCS GAFKDGSLRV VRNGIGINEQ ASVELQGIKG MWSLKSSIDE AFDTFLVVSF
0401: ISETRILAMN LEDELEETEI EGFLSQVQTL FCHDAVYNQL VQVTSNSVRL VSSTTRELRD EWHAPAGFTV NVATANASQV LLATGGGHLV YLEIGDGKLT
0501: EVQHALLEYE VSCLDINPIG DNPNYSQLAA VGMWTDISVR IFSLPELTLI TKEQLGGEII PRSVLLCAFE GISYLLCALG DGHLLNFQMD TTTGQLKDRK
0601: KVSLGTQPIT LRTFSSKSAT HVFAASDRPT VIYSSNKKLL YSNVNLKEVS HMCPFNSAAF PDSLAIAREG ELTIGTIDDI QKLHIRTIPL GEHARRICHQ
0701: EQTRTFGICS LGNQSNSEES EMHFVRLLDD QTFEFMSTYP LDSFEYGCSI LSCSFTEDKN VYYCVGTAYV LPEENEPTKG RILVFIVEDG RLQLIAEKET
0801: KGAVYSLNAF NGKLLAAINQ KIQLYKWMLR DDGTRELQSE CGHHGHILAL YVQTRGDFIV VGDLMKSISL LLYKHEEGAI EERARDYNAN WMSAVEILDD
0901: DIYLGAENNF NLLTVKKNSE GATDEERGRL EVVGEYHLGE FVNRFRHGSL VMRLPDSEIG QIPTVIFGTV NGVIGVIASL PQEQYTFLEK LQSSLRKVIK
1001: GVGGLSHEQW RSFNNEKRTA EARNFLDGDL IESFLDLSRN KMEDISKSMN VQVEELCKRV EELTRLH

Arabidopsis Description

DDB1ADDB1A [Source:UniProtKB/TrEMBL;Acc:A0A178UYD4]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.