CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, cytosol

Predictor Summary:

nucleus 1
endoplasmic reticulum 2
extracellular 1
vacuole 2
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, vacuole
Any Predictor:	endoplasmic reticulum, nucleus, vacuole
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67958
CDX68590
CDX69061
CDX72295
CDX72483
CDX75436
CDX76284
CDX77644
CDX79362
CDX84902
CDX87331
CDX87735
CDX88663
CDX90556
CDX90747
CDX90908
CDX91264
CDX92872
CDX96086
CDY01817
CDY01885
CDY02805
CDY02834
CDY03208
CDY03235
CDY03567
CDY05087
CDY09730
CDY12650
CDY13413
CDY14200
CDY17974
CDY21934
CDY22095
CDY23283
CDY23617
CDY27634
CDY29906
CDY32686
CDY32715
CDY33461
CDY35152
CDY36454
CDY39955
CDY43529
CDY43875
CDY43957
CDY45313
CDY46247
CDY53220
CDY54298
CDY58569
CDY59253
CDY60743
CDY62688
CDY64887
CDY66129
CDY66331
CDY66907
CDY67127
CDY72277

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G05420.1	CDX84902	AT1G19750.1	20622147
AT4G05420.1	CDY27634	AT1G19750.1	20622147
AT4G05420.1	CDX96086	AT1G65030.1	18223036
AT4G05420.1	CDY01817	AT1G65030.1	18223036
AT4G05420.1	CDY01885	AT1G65030.1	18223036
AT4G05420.1	CDY12650	AT1G65030.1	18223036
AT4G05420.1	CDY64887	AT1G65030.1	18223036
AT4G05420.1	CDX67958	AT1G80670.1	18223036
AT4G05420.1	CDX79362	AT1G80670.1	18223036
AT4G05420.1	CDX87331	AT1G80670.1	18223036
AT4G05420.1	CDY39955	AT1G80670.1	18223036
AT4G05420.1	CDY53220	AT1G80670.1	18223036
AT4G05420.1	CDY66129	AT1G80670.1	18223036
AT4G05420.1	CDY60743	AT2G19430.1	18223036
AT4G05420.1	CDY66907	AT2G19430.1	18223036
AT4G05420.1	CDY23617	AT3G13550.1	16844902
AT4G05420.1	CDY59253	AT3G13550.1	16844902
AT4G05420.1	CDX90908	AT4G03020.1	21798944
AT4G05420.1	CDX91264	AT4G03020.1	21798944
AT4G05420.1	CDY17974	AT4G03020.1	21798944
AT4G05420.1	CDY21934	AT4G03020.1	21798944
AT4G05420.1	CDY22095	AT4G03020.1	21798944
AT4G05420.1	CDY67127	AT4G03020.1	21798944
AT4G05420.1	CDY72277	AT4G03020.1	21798944
AT4G05420.1	CDX90747	AT4G10180.1	16792691
AT4G05420.1	CDY05087	AT4G10180.1	16792691
AT4G05420.1	CDY54298	AT4G15730.1	21798944
AT4G05420.1	CDY66331	AT4G15730.1	21798944
AT4G05420.1	CDX90556	AT4G15900.1	18223036
AT4G05420.1	CDY09730	AT4G15900.1	18223036
AT4G05420.1	CDX92872	AT4G28450.1	18223036
AT4G05420.1	CDY29906	AT4G28450.1	18223036
AT4G05420.1	CDX68590	AT4G29830.1	18223036
AT4G05420.1	CDY03567	AT4G29830.1	18223036
AT4G05420.1	CDY14200	AT4G29830.1	18223036
AT4G05420.1	CDY43529	AT4G29830.1	18223036
AT4G05420.1	CDX72295	AT4G31160.1	18552200
AT4G05420.1	CDY03208	AT4G31160.1	18552200
AT4G05420.1	CDY13413	AT4G31160.1	18552200
AT4G05420.1	CDY23283	AT4G31160.1	18552200
AT4G05420.1	CDY36454	AT4G31160.1	18552200
AT4G05420.1	CDX69061	AT4G34460.1	18223036
AT4G05420.1	CDX72483	AT4G34460.1	18223036
AT4G05420.1	CDX75436	AT4G34460.1	18223036
AT4G05420.1	CDX76284	AT4G34460.1	18223036
AT4G05420.1	CDY45313	AT4G34460.1	18223036
AT4G05420.1	CDY46247	AT4G34460.1	18223036
AT4G05420.1	CDX77644	AT5G46210.1	16792691
AT4G05420.1	CDX87735	AT5G46210.1	16792691
AT4G05420.1	CDY03235	AT5G46210.1	16792691
AT4G05420.1	CDY33461	AT5G46210.1	16792691
AT4G05420.1	CDY35152	AT5G46210.1	16792691
AT4G05420.1	CDY43957	AT5G46210.1	16792691
AT4G05420.1	CDX77644	AT5G46210.1	16844902
AT4G05420.1	CDX87735	AT5G46210.1	16844902
AT4G05420.1	CDY03235	AT5G46210.1	16844902
AT4G05420.1	CDY33461	AT5G46210.1	16844902
AT4G05420.1	CDY35152	AT5G46210.1	16844902
AT4G05420.1	CDY43957	AT5G46210.1	16844902
AT4G05420.1	CDX77644	AT5G46210.1	18223036
AT4G05420.1	CDX87735	AT5G46210.1	18223036
AT4G05420.1	CDY03235	AT5G46210.1	18223036
AT4G05420.1	CDY33461	AT5G46210.1	18223036
AT4G05420.1	CDY35152	AT5G46210.1	18223036
AT4G05420.1	CDY43957	AT5G46210.1	18223036
AT4G05420.1	CDX77644	AT5G46210.1	18551167
AT4G05420.1	CDX87735	AT5G46210.1	18551167
AT4G05420.1	CDY03235	AT5G46210.1	18551167
AT4G05420.1	CDY33461	AT5G46210.1	18551167
AT4G05420.1	CDY35152	AT5G46210.1	18551167
AT4G05420.1	CDY43957	AT5G46210.1	18551167
AT4G05420.1	CDX88663	AT5G58230.1	21240189
AT4G05420.1	CDY02805	AT5G58230.1	21240189
AT4G05420.1	CDY32715	AT5G58230.1	21240189
AT4G05420.1	CDY43875	AT5G58230.1	21240189
AT4G05420.1	CDY58569	AT5G58230.1	21240189
AT4G05420.1	CDY62688	AT5G58230.1	21240189
AT4G05420.1	CDY02834	AT5G58760.1	16792691
AT4G05420.1	CDY32686	AT5G58760.1	16792691
AT4G05420.1	CDY02834	AT5G58760.1	18551167
AT4G05420.1	CDY32686	AT5G58760.1	18551167
AT4G05420.1	CDY02834	AT5G58760.1	21240189
AT4G05420.1	CDY32686	AT5G58760.1	21240189

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69266	Canola	nucleus	99.63	97.26
KRH43086	Soybean	nucleus	34.02	89.66
KRH59212	Soybean	cytosol, nucleus	82.62	82.93
KRH25071	Soybean	nucleus	83.55	74.87
HORVU7Hr1G056610.1	Barley	cytosol	19.44	52.26
Bra029577.1-P	Field mustard	nucleus, peroxisome, plastid	100.0	49.26
AT4G05420.1	Thale cress	cytosol, nucleus, peroxisome	96.64	47.52
PGSC0003DMT400009595	Potato	nucleus	22.43	45.98
VIT_10s0003g04360.t01	Wine grape	cytosol, nucleus, plasma membrane	89.53	43.99
Solyc02g021650.2.1	Tomato	nucleus	88.04	43.01
CDY57060	Canola	cytosol, nucleus, plasma membrane	88.22	42.79
GSMUA_Achr8P07200_001	Banana	cytosol, nucleus, plasma membrane	85.98	42.24
CDX76416	Canola	cytosol	87.29	41.4
KXG22678	Sorghum	nucleus	80.56	39.58
TraesCS1B01G473400.1	Wheat	nucleus	80.37	39.45
Zm00001d039165_P046	Maize	nucleus	80.56	39.43
TraesCSU01G002300.1	Wheat	golgi, plastid	80.19	39.36
TraesCS1D01G445700.1	Wheat	unclear	79.81	39.17
Zm00001d009745_P023	Maize	cytosol, nucleus, plasma membrane, plastid	79.07	38.49
HORVU1Hr1G094530.1	Barley	nucleus, plastid	80.56	37.67
TraesCS3B01G240600.1	Wheat	cytosol	64.49	33.37
TraesCS3A01G210100.2	Wheat	nucleus	64.49	31.74
HORVU3Hr1G050820.11	Barley	plastid	64.49	30.48
CDY36309	Canola	cytosol, nucleus, plastid	22.43	10.16
CDY36325	Canola	nucleus, plastid, vacuole	22.43	10.11
CDY54326	Canola	cytosol	3.18	7.42
CDX73841	Canola	nucleus, plastid	17.38	6.94
CDY00750	Canola	nucleus	17.2	6.87
CDY08477	Canola	nucleus	16.07	6.32
CDY01074	Canola	nucleus	15.89	6.25
CDY50606	Canola	golgi, mitochondrion, plasma membrane	0.19	0.32
KRH59213	Soybean	cytosol, plasma membrane, plastid	0.0	0.0
CDY69930	Canola	plastid	0.0	0.0
HORVU7Hr1G056620.1	Barley	cytosol	0.0	0.0
CDY70585	Canola	plastid	0.0	0.0

Protein Annotations

MapMan:14.6.1.3.1	MapMan:19.2.2.8.3.2	Gene3D:2.130.10.10	MapMan:26.1.1.3.2	Gene3D:3.30.980.30	GO:A0A078JNY2
UniProt:A0A078JNY2	EnsemblPlants:CDY68484	ProteinID:CDY68484	ProteinID:CDY68484.1	InterPro:Cleavage/polyA-sp_fac_asu_C	InterPro:DDB1
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00074801001	InterPro:IPR015943	PFAM:PF03178
PANTHER:PTHR10644	PANTHER:PTHR10644:SF3	SUPFAM:SSF50978	UniParc:UPI0004EEE541	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat_dom_sf

Description

BnaAnng27410DBnaAnng27410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JNY2]

Coordinates

chrLK037411:+:31..2193

Molecular Weight (calculated)

60380.2 Da

IEP (calculated)

5.208

GRAVY (calculated)

-0.208

Length

535 amino acids

Sequence
(BLAST)

001: MWTDISVRIF SLPELTLITK EQLGGEIIPR SVLLCSFEGI SYLLCALGDG HLLNFQLDTT TGQLKDRKKV SLGTQPITLR TFSSKSATHV FAASDRPTVI
101: YSSNKKLLYS NVNLKEVSYM CPFNSAAFPD SLAIAREGEL TIGTIDDIQK LHIRTIPLGE HARRICHQEQ TRTFGICSLG NQTNAEESEM HFVRLLDDQS
201: FEFMSTYPLD AFEYACSILS CSFTDDKNVY YCVGTAYVLP EENEPTKGRI LVFIVEDAKL QLIAEKETKG AVYSLNAFNG KLLAAINQKI QLYKWMLRDD
301: GTRELQSECG HHGHILALYV QTRGDFIVVG DLMKSISLLI YKHEEGAIEE RARDYNANWM SAVEILDDDT YLGAENNFNL LTVKKNSEGA TDEERGRLEV
401: VGEYHLGEFV NRFCHGSLVM RLPDSEIGQI PTVIFGTVNG MIGVIASLPQ EQYAFLEKLQ SSLRKVIKGV GGLSHEQWRS FNNEKRTVEA RNFLDGDLIE
501: SFLDLSRNKM EEISKSMNVQ VEELCKRVEE LTRLH

Best Arabidopsis Sequence Match ( AT4G05420.2 )
(BLAST)

0001: MSSWNYVVTA HKPTSVTHSC VGNFTSPQEL NLIVAKCTRI EIHLLTPQGL QPMLDVPIYG RIATLELFRP HGEAQDFLFI ATERYKFCVL QWDPESSELI
0101: TRAMGDVSDR IGRPTDNGQV IPFDNKGQLK EAFNIRLEEL QVLDIKFLFG CAKPTIAVLY QDNKDARHVK TYEVSLKDKD FVEGPWSQNS LDNGADLLIP
0201: VPPPLCGVLI IGEETIVYCS ASAFKAIPIR PSITKAYGRV DVDGSRYLLG DHAGMIHLLV ITHEKEKVTG LKIELLGETS IASTISYLDN AVVFVGSSYG
0301: DSQLVKLNLH PDAKGSYVEV LERYINLGPI VDFCVVDLER QGQGQVVTCS GAFKDGSLRV VRNGIGINEQ ASVELQGIKG MWSLKSSIDE AFDTFLVVSF
0401: ISETRILAMN LEDELEETEI EGFLSQVQTL FCHDAVYNQL VQVTSNSVRL VSSTTRELRD EWHAPAGFTV NVATANASQV LLATGGGHLV YLEIGDGKLT
0501: EVQHALLEYE VSCLDINPIG DNPNYSQLAA VGMWTDISVR IFSLPELTLI TKEQLGGEII PRSVLLCAFE GISYLLCALG DGHLLNFQMD TTTGQLKDRK
0601: KVSLGTQPIT LRTFSSKSAT HVFAASDRPT VIYSSNKKLL YSNVNLKEVS HMCPFNSAAF PDSLAIAREG ELTIGTIDDI QKLHIRTIPL GEHARRICHQ
0701: EQTRTFGICS LGNQSNSEES EMHFVRLLDD QTFEFMSTYP LDSFEYGCSI LSCSFTEDKN VYYCVGTAYV LPEENEPTKG RILVFIVEDG RLQLIAEKET
0801: KGAVYSLNAF NGKLLAAINQ KIQLYKWMLR DDGTRELQSE CGHHGHILAL YVQTRGDFIV VGDLMKSISL LLYKHEEGAI EERARDYNAN WMSAVEILDD
0901: DIYLGAENNF NLLTVKKNSE GATDEERGRL EVVGEYHLGE FVNRFRHGSL VMRLPDSEIG QIPTVIFGTV NGVIGVIASL PQEQYTFLEK LQSSLRKVIK
1001: GVGGLSHEQW RSFNNEKRTA EARNFLDGDL IESFLDLSRN KMEDISKSMN VQVEELCKRV EELTRLH

Arabidopsis Description

DDB1ADDB1A [Source:UniProtKB/TrEMBL;Acc:A0A178UYD4]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.