CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0383700-01	Rice	nucleus	35.92	30.83
HORVU1Hr1G060850.2	Barley	cytosol	66.99	21.7
Bra000849.1-P	Field mustard	nucleus	99.03	20.82
CDY17974	Canola	nucleus	98.06	20.57
CDX90908	Canola	nucleus	98.06	20.57
AT4G03020.1	Thale cress	nucleus	95.15	19.88
CDY22095	Canola	cytosol	95.15	19.22
VIT_07s0104g00900.t01	Wine grape	cytosol	87.38	18.52
KRH31954	Soybean	cytosol	84.47	17.65
Solyc06g008880.2.1	Tomato	nucleus	80.58	17.51
PGSC0003DMT400016081	Potato	nucleus	76.7	16.92
GSMUA_Achr10P...	Banana	cytosol	73.79	15.77
Os05t0407200-01	Rice	nucleus	67.96	15.12
TraesCS1A01G255000.1	Wheat	nucleus	66.02	14.85
TraesCS1D01G254400.1	Wheat	nucleus	66.02	14.85
TraesCS1B01G263400.2	Wheat	nucleus	66.02	14.81
CDX91264	Canola	cytosol	52.43	14.75
GSMUA_Achr3P23760_001	Banana	cytosol	49.51	13.86
TraesCS1B01G083400.1	Wheat	cytosol	62.14	13.62
TraesCS1D01G066000.1	Wheat	cytosol	62.14	13.62
TraesCS1A01G065300.2	Wheat	cytosol	61.16	13.4
KXG21980	Sorghum	cytosol	58.25	13.04
Zm00001d010305_P004	Maize	cytosol	58.25	13.04
TraesCS1D01G088200.1	Wheat	nucleus	57.28	12.5
TraesCS1A01G086800.2	Wheat	nucleus	55.34	12.1
TraesCS1B01G105200.2	Wheat	mitochondrion, nucleus	55.34	12.08
HORVU1Hr1G018790.5	Barley	cytosol	58.25	12.0
KXG21285	Sorghum	cytosol, mitochondrion, nucleus	52.43	11.11
KRH71501	Soybean	cytosol	36.89	11.08
Zm00001d010892_P013	Maize	plastid	54.37	11.02
CDY21934	Canola	plastid	95.15	10.27
Os05t0144100-01	Rice	cytosol, nucleus	7.77	2.43
HORVU0Hr1G000250.10	Barley	cytosol	2.91	1.29
CDY72277	Canola	cytosol, nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:CDY67127	EnsemblPlantsGene:GSBRNA2T00059598001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:WD40_repeat_dom_sf
PANTHER:PTHR19847	PANTHER:PTHR19847:SF15	ProteinID:CDY67127	ProteinID:CDY67127.1	SUPFAM:SSF50978	UniParc:UPI0004EEF656
UniProt:A0A078JP20	MapMan:35.1	:	:	:	:

Description

BnaA03g57240DBnaA03g57240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JP20]

Coordinates

chrLK035790:+:10636..11649

Molecular Weight (calculated)

11614.9 Da

IEP (calculated)

10.288

GRAVY (calculated)

-0.351

Length

103 amino acids

Sequence
(BLAST)

001: MLAGRESNFS GRGGRFSAAD CCHMLSRYLP VKGPWLVDQM NSRAYVSQFS TDGSLFIAGF QGSHIRIYNV EKGWKVQKDI LAKSLRWTVT DTSLSPDQRN
101: LVR

Best Arabidopsis Sequence Match ( AT4G03020.1 )
(BLAST)

001: MFFGPSEFDA DEMGYAMSRL EIESDLCDTG KDVCGVGSSS GSHRSSEHLA DLDHEISQVT KLKSSPHQRY SREVPGRHQL PVSTVRMLAG RESNFSGRGR
101: FSAADCCHML SRYLPTKGPW LVDQMDSRAY VSQFSTDGSL FIAGFQGSRI RIYNVEKGWK VQKDILAKSL RWTVTDTSLS PDQRNLVYAS MSPIVHIVDV
201: GSGSTESHAN VTEIHDGLDF SSDEDGGYSF GIFSVKFSTD GREVVAGSSD DSIYVYDLEA NRVSLRTVAH TSDVNTVCFA DESGNLILSG SDDNLCKVWD
301: RRCFIGRDKP AGVLVGHLEG VTFIDSRGDG RYFISNGKDQ TIKLWDIRKM SSSAPARHEV LRNYEWDYRW MDYPTEARDL KHPLDQSVST YKGHSVLRTL
401: IRCYFSPAHS TGQKYIYTGS NDSSVYIYDL VSGDKVAVLK HHSSPVRDCN WHPYYPTLIS SSWDGDLVKW EFPGSGEAPI MSKKRVRRRH FYY

Arabidopsis Description

Putative WD-repeat protein [Source:UniProtKB/TrEMBL;Acc:Q8LPI5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.