CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72277	Canola	cytosol, nucleus	44.81	83.67
CDX90908	Canola	nucleus	84.43	62.93
CDY17974	Canola	nucleus	84.15	62.73
AT4G03020.1	Thale cress	nucleus	84.15	62.47
CDY22095	Canola	cytosol	83.88	60.2
GSMUA_Achr3P23760_001	Banana	cytosol	60.38	60.05
Os05t0144100-01	Rice	cytosol, nucleus	50.0	55.62
KRH71501	Soybean	cytosol	50.82	54.23
Solyc06g008880.2.1	Tomato	nucleus	69.67	53.8
VIT_07s0104g00900.t01	Wine grape	cytosol	70.22	52.88
CDY67127	Canola	mitochondrion	14.75	52.43
KRH31954	Soybean	cytosol	69.95	51.93
HORVU0Hr1G000250.10	Barley	cytosol	32.51	51.07
PGSC0003DMT400016081	Potato	nucleus	64.48	50.54
TraesCS1D01G254400.1	Wheat	nucleus	59.84	47.82
TraesCS1A01G255000.1	Wheat	nucleus	59.84	47.82
GSMUA_Achr10P...	Banana	cytosol	62.84	47.72
TraesCS1B01G263400.2	Wheat	nucleus	59.84	47.71
Zm00001d010305_P004	Maize	cytosol	59.84	47.61
KXG21980	Sorghum	cytosol	59.29	47.17
Os05t0407200-01	Rice	nucleus	59.56	47.08
TraesCS1D01G088200.1	Wheat	nucleus	59.29	45.97
HORVU1Hr1G060850.2	Barley	cytosol	39.89	45.91
TraesCS1A01G086800.2	Wheat	nucleus	59.02	45.86
TraesCS1B01G105200.2	Wheat	mitochondrion, nucleus	58.47	45.34
TraesCS1B01G083400.1	Wheat	cytosol	57.1	44.47
TraesCS1D01G066000.1	Wheat	cytosol	56.83	44.26
TraesCS1A01G065300.2	Wheat	cytosol	56.28	43.83
HORVU1Hr1G018790.5	Barley	cytosol	59.29	43.4
KXG21285	Sorghum	cytosol, mitochondrion, nucleus	56.56	42.59
Zm00001d010892_P013	Maize	plastid	57.1	41.14
CDY21934	Canola	plastid	84.7	32.49
Os01t0383700-01	Rice	nucleus	3.83	11.67

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlants:CDX91264	ProteinID:CDX91264	ProteinID:CDX91264.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00152496001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
PFAM:PF00400	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19847	PANTHER:PTHR19847:SF15	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI0004EE4C15	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

BnaC02g26750D

Coordinates

chrLK031866:+:833276..835086

Molecular Weight (calculated)

41201.3 Da

IEP (calculated)

6.955

GRAVY (calculated)

-0.327

Length

366 amino acids

Sequence
(BLAST)

001: MDSRAYVSQF STDGSLFIAA FQGSHIRIYN VEKGWKVHKD ILTKSLRWTV TDTSLSPVSR ESSFVFANMS PIVHIVDVGS GATESHANVT MLVFLHGIHD
101: GLDFSTAEDG GYSFGMFSVK FSTDGRELVA GSSDDSIYVY DLEANRGSLL TVAHTSDVNT VCFADESDDN LCKVWDRRCF IGRDKAAGVL VGHLEGVTFI
201: DTRGDGRYFI SNGKDQTIKL WDIRKMSATP PHAKNYEWDY RCMEYPPESI NLKHPFDQSV STYKGQSVLR TLIRCYFSPL HRSVFSSSIT TGSNDSSVYI
301: YDLVSGDKVV VLKHHSSPIR DCTWHPHYPT IKSSSWDGDL VKWEFPGSGE APIMSNKRVR RRHFYY

Best Arabidopsis Sequence Match ( AT4G03020.1 )
(BLAST)

001: MFFGPSEFDA DEMGYAMSRL EIESDLCDTG KDVCGVGSSS GSHRSSEHLA DLDHEISQVT KLKSSPHQRY SREVPGRHQL PVSTVRMLAG RESNFSGRGR
101: FSAADCCHML SRYLPTKGPW LVDQMDSRAY VSQFSTDGSL FIAGFQGSRI RIYNVEKGWK VQKDILAKSL RWTVTDTSLS PDQRNLVYAS MSPIVHIVDV
201: GSGSTESHAN VTEIHDGLDF SSDEDGGYSF GIFSVKFSTD GREVVAGSSD DSIYVYDLEA NRVSLRTVAH TSDVNTVCFA DESGNLILSG SDDNLCKVWD
301: RRCFIGRDKP AGVLVGHLEG VTFIDSRGDG RYFISNGKDQ TIKLWDIRKM SSSAPARHEV LRNYEWDYRW MDYPTEARDL KHPLDQSVST YKGHSVLRTL
401: IRCYFSPAHS TGQKYIYTGS NDSSVYIYDL VSGDKVAVLK HHSSPVRDCN WHPYYPTLIS SSWDGDLVKW EFPGSGEAPI MSKKRVRRRH FYY

Arabidopsis Description

Putative WD-repeat protein [Source:UniProtKB/TrEMBL;Acc:Q8LPI5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.