CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010892_P013	Maize	plastid	81.48	77.95
Os05t0144100-01	Rice	cytosol, nucleus	48.35	71.43
TraesCS1B01G105200.2	Wheat	mitochondrion, nucleus	65.84	67.8
TraesCS1A01G086800.2	Wheat	nucleus	65.64	67.73
TraesCS1D01G088200.1	Wheat	nucleus	65.23	67.16
HORVU1Hr1G018790.5	Barley	cytosol	66.46	64.6
CDY72277	Canola	cytosol, nucleus	25.72	63.78
GSMUA_Achr3P23760_001	Banana	cytosol	46.5	61.41
CDX91264	Canola	cytosol	42.59	56.56
KXG21980	Sorghum	cytosol	51.03	53.91
Solyc06g008880.2.1	Tomato	nucleus	51.65	52.95
AT4G03020.1	Thale cress	nucleus	53.7	52.94
KRH20977	Soybean	cytosol	51.44	52.63
PGSC0003DMT400016081	Potato	nucleus	50.41	52.46
CDY67127	Canola	mitochondrion	11.11	52.43
CDY17974	Canola	nucleus	52.88	52.34
Bra000849.1-P	Field mustard	nucleus	52.67	52.24
Solyc01g080690.2.1	Tomato	cytosol	50.41	52.24
CDX90908	Canola	nucleus	52.67	52.14
KRH31954	Soybean	cytosol	52.06	51.32
VIT_07s0104g00900.t01	Wine grape	cytosol	50.82	50.82
KRH71501	Soybean	cytosol	35.8	50.73
Bra034178.1-P	Field mustard	cytosol	52.88	50.39
CDY22095	Canola	cytosol	52.67	50.2
KRH11292	Soybean	cytosol	50.82	45.57
CDY21934	Canola	plastid	52.88	26.94

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A1B6P6L1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KXG21285	ProteinID:KXG21285	ProteinID:KXG21285.1
PFAM:PF00400	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19847	PANTHER:PTHR19847:SF15	SMART:SM00320
EnsemblPlantsGene:SORBI_3009G040400	SUPFAM:SSF50978	UniParc:UPI0003C67A78	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:3884545..3890918

Molecular Weight (calculated)

54780.9 Da

IEP (calculated)

8.656

GRAVY (calculated)

-0.564

Length

486 amino acids

Sequence
(BLAST)

001: MRGVRRSARG ESSRKAADRD RDRDRDQDVE RFALCAKMSH LTRTTSEPCR RTRGAAWARR SRPFSAFELV SAREAGRAGG AGFSAADRAY LGRQHIPSKG
101: PWGVDDVDSE AYVSQFSADG SLLIAGFRGS RIKVYDAEKG WKIQKDISCR MVHWTISDIA LSPDQRFLAY ASLSPTVHIV NVQSAGKESH ANITEIHEGL
201: DLTGGDEDED FGIFSVKFSK DGKEIVVGNN ERSIYVYDLA TNKVSARIRA HKADVNAVTF ADESGNVLYS GSDDSFCKVW DRRCLSGEKS AGILTGHLDG
301: VTFIDSRGDG RYFISNCKDQ RIKLWDIRKM SSVVRARPVS LVDWDYRWMP FPSEAHYFKH PDDQSVATYR GHSVLRTLIR CYFSPVHSTG QRYIYTGSSD
401: KTVHIYDVVS GETVKKLSWH DSIIRDCTWH PYYPTLVSSS WDGYVARWEA SGDDKDPSML VHNEKRAGAG TRYFRRYADP FTDAFM

Best Arabidopsis Sequence Match ( AT4G03020.1 )
(BLAST)

001: MFFGPSEFDA DEMGYAMSRL EIESDLCDTG KDVCGVGSSS GSHRSSEHLA DLDHEISQVT KLKSSPHQRY SREVPGRHQL PVSTVRMLAG RESNFSGRGR
101: FSAADCCHML SRYLPTKGPW LVDQMDSRAY VSQFSTDGSL FIAGFQGSRI RIYNVEKGWK VQKDILAKSL RWTVTDTSLS PDQRNLVYAS MSPIVHIVDV
201: GSGSTESHAN VTEIHDGLDF SSDEDGGYSF GIFSVKFSTD GREVVAGSSD DSIYVYDLEA NRVSLRTVAH TSDVNTVCFA DESGNLILSG SDDNLCKVWD
301: RRCFIGRDKP AGVLVGHLEG VTFIDSRGDG RYFISNGKDQ TIKLWDIRKM SSSAPARHEV LRNYEWDYRW MDYPTEARDL KHPLDQSVST YKGHSVLRTL
401: IRCYFSPAHS TGQKYIYTGS NDSSVYIYDL VSGDKVAVLK HHSSPVRDCN WHPYYPTLIS SSWDGDLVKW EFPGSGEAPI MSKKRVRRRH FYY

Arabidopsis Description

Putative WD-repeat protein [Source:UniProtKB/TrEMBL;Acc:Q8LPI5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.