Factsheet for Os05t0144100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72277	Canola	cytosol, nucleus	36.47	61.22
TraesCS1D01G088200.1	Wheat	nucleus	81.46	56.78
TraesCS1B01G105200.2	Wheat	mitochondrion, nucleus	81.16	56.57
TraesCS1A01G086800.2	Wheat	nucleus	80.24	56.05
GSMUA_Achr3P23760_001	Banana	cytosol	61.4	54.89
HORVU1Hr1G018790.5	Barley	cytosol	80.55	53.0
CDX91264	Canola	cytosol	55.62	50.0
KXG21285	Sorghum	cytosol, mitochondrion, nucleus	71.43	48.35
Zm00001d010892_P013	Maize	plastid	72.95	47.24
KRH71501	Soybean	cytosol	46.2	44.31
PGSC0003DMT400016081	Potato	nucleus	61.4	43.25
Solyc01g080690.2.1	Tomato	cytosol	60.79	42.64
Solyc06g008880.2.1	Tomato	nucleus	61.09	42.41
AT4G03020.1	Thale cress	nucleus	63.22	42.19
Bra000849.1-P	Field mustard	nucleus	62.61	42.04
CDY17974	Canola	nucleus	62.61	41.96
CDX90908	Canola	nucleus	62.61	41.96
Os05t0407200-01	Rice	nucleus	58.66	41.68
VIT_07s0104g00900.t01	Wine grape	cytosol	61.4	41.56
KRH20977	Soybean	cytosol	59.57	41.26
KRH31954	Soybean	cytosol	61.09	40.77
Bra034178.1-P	Field mustard	cytosol	61.09	39.41
CDY22095	Canola	cytosol	60.79	39.22
KRH11292	Soybean	cytosol	58.66	35.61
CDY21934	Canola	plastid	61.09	21.07
CDY67127	Canola	mitochondrion	2.43	7.77
Os01t0383700-01	Rice	nucleus	0.3	0.83

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	ProteinID:BAF16536.1	ProteinID:BAS92227.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlantsGene:Os05g0144100	EnsemblPlants:Os05t0144100-01
PFAM:PF00400	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19847	PANTHER:PTHR19847:SF15	UniProt:Q0DKT7
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0000E1233F	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	:	:	:	:	:

Description

OsWD40-113WD40 repeat-like domain containing protein. (Os05t0144100-01)

Coordinates

chr5:+:2537632..2540611

Molecular Weight (calculated)

37583.6 Da

IEP (calculated)

5.582

GRAVY (calculated)

-0.491

Length

329 amino acids

Sequence
(BLAST)

001: QWTVSDIALS PDQQLLAYSS LSPTVHIVNV QSSAKESQAN VTEIHDGLEF SNDDDDEYSF GIFSVKFSKD GQEIVVGNSD RSINVYDLRA NKVSVRIRAH
101: AADVNAVTFA DESGNLLYSG SDDNLCKVWD RRCLAREKPA GVLTGHLDGI TFIDSRGDGR YFISNCKDQT IKLWDVRKMS ASIKGRQPRF FDWDYRWMSF
201: PLEARHCKHP NDQSLATYRG HSVLRTLIRC YFSPVYSTGQ RYIYTGSSDE YVYIYDVVTG DIVEKLSWHG SIIRDCTWHP YNLTIVSSSW DGYLARWEAS
301: GDEDDLSVLT ENEQRTSPYR QSYTRHLLL

Best Arabidopsis Sequence Match ( AT4G03020.1 )
(BLAST)

001: MFFGPSEFDA DEMGYAMSRL EIESDLCDTG KDVCGVGSSS GSHRSSEHLA DLDHEISQVT KLKSSPHQRY SREVPGRHQL PVSTVRMLAG RESNFSGRGR
101: FSAADCCHML SRYLPTKGPW LVDQMDSRAY VSQFSTDGSL FIAGFQGSRI RIYNVEKGWK VQKDILAKSL RWTVTDTSLS PDQRNLVYAS MSPIVHIVDV
201: GSGSTESHAN VTEIHDGLDF SSDEDGGYSF GIFSVKFSTD GREVVAGSSD DSIYVYDLEA NRVSLRTVAH TSDVNTVCFA DESGNLILSG SDDNLCKVWD
301: RRCFIGRDKP AGVLVGHLEG VTFIDSRGDG RYFISNGKDQ TIKLWDIRKM SSSAPARHEV LRNYEWDYRW MDYPTEARDL KHPLDQSVST YKGHSVLRTL
401: IRCYFSPAHS TGQKYIYTGS NDSSVYIYDL VSGDKVAVLK HHSSPVRDCN WHPYYPTLIS SSWDGDLVKW EFPGSGEAPI MSKKRVRRRH FYY

Arabidopsis Description

Putative WD-repeat protein [Source:UniProtKB/TrEMBL;Acc:Q8LPI5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.