Factsheet for VIT_07s0104g00900.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67127	Canola	mitochondrion	18.52	87.38
Solyc06g008880.2.1	Tomato	nucleus	74.49	76.37
AT4G03020.1	Thale cress	nucleus	76.54	75.46
KRH31954	Soybean	cytosol	76.13	75.05
CDY17974	Canola	nucleus	75.1	74.34
Bra000849.1-P	Field mustard	nucleus	74.69	74.08
CDY72277	Canola	cytosol, nucleus	29.84	73.98
CDX90908	Canola	nucleus	74.69	73.93
Bra034178.1-P	Field mustard	cytosol	75.72	72.16
CDY22095	Canola	cytosol	75.31	71.76
CDX91264	Canola	cytosol	52.88	70.22
PGSC0003DMT400016081	Potato	nucleus	66.46	69.16
GSMUA_Achr3P23760_001	Banana	cytosol	52.26	69.02
GSMUA_Achr10P...	Banana	cytosol	63.99	64.52
KRH71501	Soybean	cytosol	45.06	63.85
Os05t0407200-01	Rice	nucleus	60.29	63.28
HORVU1Hr1G060850.2	Barley	cytosol	41.36	63.21
Zm00001d010305_P004	Maize	cytosol	59.26	62.61
TraesCS1D01G254400.1	Wheat	nucleus	58.85	62.45
TraesCS1A01G255000.1	Wheat	nucleus	58.85	62.45
KXG21980	Sorghum	cytosol	58.85	62.17
TraesCS1B01G263400.2	Wheat	nucleus	58.23	61.66
Os05t0144100-01	Rice	cytosol, nucleus	41.56	61.4
TraesCS1D01G088200.1	Wheat	nucleus	56.38	58.05
TraesCS1A01G086800.2	Wheat	nucleus	56.17	57.96
TraesCS1B01G105200.2	Wheat	mitochondrion, nucleus	55.97	57.63
TraesCS1B01G083400.1	Wheat	cytosol	55.56	57.45
TraesCS1A01G065300.2	Wheat	cytosol	55.14	57.02
TraesCS1D01G066000.1	Wheat	cytosol	54.94	56.81
HORVU0Hr1G000250.10	Barley	cytosol	26.34	54.94
HORVU1Hr1G018790.5	Barley	cytosol	55.76	54.2
KXG21285	Sorghum	cytosol, mitochondrion, nucleus	50.82	50.82
Zm00001d010892_P013	Maize	plastid	51.23	49.02
Os01t0383700-01	Rice	nucleus	11.11	45.0
CDY21934	Canola	plastid	75.93	38.68

Protein Annotations

EntrezGene:100244218	wikigene:100244218	Gene3D:2.130.10.10	MapMan:35.1	ProteinID:CCB56793	ProteinID:CCB56793.1
ncoils:Coil	InterPro:DCAF11/LEC14B	UniProt:F6HQ37	EMBL:FN596005	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EntrezGene:LOC100244218
wikigene:LOC100244218	PFAM:PF00400	PIRSF:PIRSF038135	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19847	PANTHER:PTHR19847:SF15	SMART:SM00320	SUPFAM:SSF50978	TIGR:TC64450	UniParc:UPI00019837F6
ArrayExpress:VIT_07s0104g00900	EnsemblPlantsGene:VIT_07s0104g00900	EnsemblPlants:VIT_07s0104g00900.t01	unigene:Vvi.7660	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002271734	RefSeq:XP_002271734.1	RefSeq:XP_010652091.1	:

Description

No Description!

Coordinates

chr7:-:2025777..2034210

Molecular Weight (calculated)

54560.1 Da

IEP (calculated)

6.886

GRAVY (calculated)

-0.418

Length

486 amino acids

Sequence
(BLAST)

001: MYFTASEGAA NEMGYAMSRL ELDSDFCDAG KDIHGNDNTE RLNKELNHLD HEISQLTKLR SGPHECLSQI IPGKRDSPVS TVKMLAGREG NYSGRGRFSS
101: ADCCHMLSRY LPVNGPWLVD QMTSRAYVSQ FSADGSLFVA GFQGSHIRIY NVDRGWKVQK NILAKSLRWT VTDTSLSPDQ RHLVYASMSP IVHIVNIGSA
201: ATESLANITE IHDGLDFSAA DDEGYSFGIF SVKFSTDGRE LVAGSSDDSI YVYDLEANKL SLRILAHTSD VNTVCFADES GHLIYSGSDD SLCKVWDRRC
301: FISKGKPAGV LMGHLEGITF IDSRGDGRHL ISNSKDQSIK LWDIRKMSSN ATCTPGFRNY EWDYRWMDYP TQARELKHPC DQSLSTYKGH SVLRTLIRCY
401: FSPSYSTGQK YIYSGSSDSC IYIYDLLTGA QVATLEHHKS VVRDCNWHPN YPILVSSSWD GDIVKWEFPG NGEPPLIKKR IRRKYL

Best Arabidopsis Sequence Match ( AT4G03020.1 )
(BLAST)

001: MFFGPSEFDA DEMGYAMSRL EIESDLCDTG KDVCGVGSSS GSHRSSEHLA DLDHEISQVT KLKSSPHQRY SREVPGRHQL PVSTVRMLAG RESNFSGRGR
101: FSAADCCHML SRYLPTKGPW LVDQMDSRAY VSQFSTDGSL FIAGFQGSRI RIYNVEKGWK VQKDILAKSL RWTVTDTSLS PDQRNLVYAS MSPIVHIVDV
201: GSGSTESHAN VTEIHDGLDF SSDEDGGYSF GIFSVKFSTD GREVVAGSSD DSIYVYDLEA NRVSLRTVAH TSDVNTVCFA DESGNLILSG SDDNLCKVWD
301: RRCFIGRDKP AGVLVGHLEG VTFIDSRGDG RYFISNGKDQ TIKLWDIRKM SSSAPARHEV LRNYEWDYRW MDYPTEARDL KHPLDQSVST YKGHSVLRTL
401: IRCYFSPAHS TGQKYIYTGS NDSSVYIYDL VSGDKVAVLK HHSSPVRDCN WHPYYPTLIS SSWDGDLVKW EFPGSGEAPI MSKKRVRRRH FYY

Arabidopsis Description

Putative WD-repeat protein [Source:UniProtKB/TrEMBL;Acc:Q8LPI5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.