Factsheet for Bra034178.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22095	Canola	cytosol	99.22	99.22
AT4G03020.1	Thale cress	nucleus	89.22	92.29
Bra000849.1-P	Field mustard	nucleus	84.9	88.37
VIT_07s0104g00900.t01	Wine grape	cytosol	72.16	75.72
KRH31954	Soybean	cytosol	71.37	73.83
Solyc06g008880.2.1	Tomato	nucleus	67.06	72.15
GSMUA_Achr3P23760_001	Banana	cytosol	49.22	68.21
PGSC0003DMT400016081	Potato	nucleus	61.57	67.24
HORVU1Hr1G060850.2	Barley	cytosol	39.61	63.52
KRH71501	Soybean	cytosol	42.35	62.97
TraesCS1D01G254400.1	Wheat	nucleus	56.27	62.66
TraesCS1A01G255000.1	Wheat	nucleus	56.27	62.66
GSMUA_Achr10P...	Banana	cytosol	59.22	62.66
TraesCS1B01G263400.2	Wheat	nucleus	55.69	61.87
Os05t0407200-01	Rice	nucleus	55.88	61.56
Os05t0144100-01	Rice	cytosol, nucleus	39.41	61.09
Zm00001d010305_P004	Maize	cytosol	54.31	60.22
KXG21980	Sorghum	cytosol	54.12	60.0
TraesCS1B01G083400.1	Wheat	cytosol	53.33	57.87
TraesCS1D01G066000.1	Wheat	cytosol	53.14	57.66
TraesCS1A01G065300.2	Wheat	cytosol	52.75	57.23
TraesCS1D01G088200.1	Wheat	nucleus	52.94	57.2
HORVU0Hr1G000250.10	Barley	cytosol	26.08	57.08
TraesCS1A01G086800.2	Wheat	nucleus	52.55	56.9
TraesCS1B01G105200.2	Wheat	mitochondrion, nucleus	52.16	56.36
HORVU1Hr1G018790.5	Barley	cytosol	53.33	54.4
KXG21285	Sorghum	cytosol, mitochondrion, nucleus	50.39	52.88
Zm00001d010892_P013	Maize	plastid	50.98	51.18
Os01t0383700-01	Rice	nucleus	10.78	45.83

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlantsGene:Bra034178	EnsemblPlants:Bra034178.1	EnsemblPlants:Bra034178.1-P	InterPro:DCAF11/LEC14B
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	UniProt:M4EZD5	PFAM:PF00400	PIRSF:PIRSF038135	PRINTS:PR00320	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19847	PANTHER:PTHR19847:SF15	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002543BF8
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

AT4G03020 (E=2e-257) | transducin family protein / WD-40 repeat family protein

Coordinates

chrA01:+:27057039..27059658

Molecular Weight (calculated)

57290.9 Da

IEP (calculated)

6.853

GRAVY (calculated)

-0.499

Length

510 amino acids

Sequence
(BLAST)

001: MCVKATTLID FGTWVLIIGP SDSDTDEMGY AMSRLEIESD LCDAGKGYYG VGSSSSSSHR SSERLGDLDN EISQVTKLKS CPHERFSRQV PGRHQLPVST
101: VRMLAGRESN FSGRGGRFSS ADRCHILSRY LPVKGPWLVD QMDSRAYVSQ FSTDGSLFIA GFQGSHIRIY NVEKGWKVQK DILAKSLRWT VTDTSLSPDQ
201: RNLVYASMSP IVHIVDVGSG TTESHANVTE IHDGLDFSSE EDGGYSFGIF SVKFSTDGRE LVAGSSDDSI YVYDLEANRV SLRTVAHTSD VNTVCFADES
301: GHLILSGGDD NLCKVWDRRC FIGRDKPAGV LVGHLEGVTF IDSRGDGRYF ISNGKDQTIK LWDIRKMSST VPARNEVHRN YEWDYRWMDY PSEARDLKHP
401: YDQSVSTYKG HSVLRTLIRC YFSPAHSTGQ KYIYTGSNDS SVYIYDLESG DKAAVLKHHS SPVRDCNWHP HYPTLISSSW DGDLVKWEFP GSGEPPIMSK
501: KRVRRRHFYY

Best Arabidopsis Sequence Match ( AT4G03020.1 )
(BLAST)

001: MFFGPSEFDA DEMGYAMSRL EIESDLCDTG KDVCGVGSSS GSHRSSEHLA DLDHEISQVT KLKSSPHQRY SREVPGRHQL PVSTVRMLAG RESNFSGRGR
101: FSAADCCHML SRYLPTKGPW LVDQMDSRAY VSQFSTDGSL FIAGFQGSRI RIYNVEKGWK VQKDILAKSL RWTVTDTSLS PDQRNLVYAS MSPIVHIVDV
201: GSGSTESHAN VTEIHDGLDF SSDEDGGYSF GIFSVKFSTD GREVVAGSSD DSIYVYDLEA NRVSLRTVAH TSDVNTVCFA DESGNLILSG SDDNLCKVWD
301: RRCFIGRDKP AGVLVGHLEG VTFIDSRGDG RYFISNGKDQ TIKLWDIRKM SSSAPARHEV LRNYEWDYRW MDYPTEARDL KHPLDQSVST YKGHSVLRTL
401: IRCYFSPAHS TGQKYIYTGS NDSSVYIYDL VSGDKVAVLK HHSSPVRDCN WHPYYPTLIS SSWDGDLVKW EFPGSGEAPI MSKKRVRRRH FYY

Arabidopsis Description

Putative WD-repeat protein [Source:UniProtKB/TrEMBL;Acc:Q8LPI5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.