Factsheet for TraesCS1B01G105200.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

cytosol 1
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G088200.1	Wheat	nucleus	97.25	97.25
TraesCS1A01G086800.2	Wheat	nucleus	93.64	93.84
HORVU1Hr1G018790.5	Barley	cytosol	90.47	85.4
Os05t0144100-01	Rice	cytosol, nucleus	56.57	81.16
KXG21285	Sorghum	cytosol, mitochondrion, nucleus	67.8	65.84
GSMUA_Achr3P23760_001	Banana	cytosol	50.85	65.22
Zm00001d010892_P013	Maize	plastid	69.28	64.37
TraesCS1B01G083400.1	Wheat	cytosol	63.98	64.26
CDY72277	Canola	cytosol, nucleus	25.64	61.73
CDX91264	Canola	cytosol	45.34	58.47
TraesCS1B01G263400.2	Wheat	nucleus	56.36	57.95
PGSC0003DMT400016081	Potato	nucleus	56.36	56.96
Solyc01g080690.2.1	Tomato	cytosol	56.14	56.5
VIT_07s0104g00900.t01	Wine grape	cytosol	57.63	55.97
Solyc06g008880.2.1	Tomato	nucleus	55.93	55.7
KRH20977	Soybean	cytosol	55.72	55.37
CDY67127	Canola	mitochondrion	12.08	55.34
AT4G03020.1	Thale cress	nucleus	56.78	54.36
Bra000849.1-P	Field mustard	nucleus	55.51	53.47
CDY17974	Canola	nucleus	55.51	53.36
CDX90908	Canola	nucleus	55.51	53.36
KRH31954	Soybean	cytosol	55.3	52.94
Bra034178.1-P	Field mustard	cytosol	56.36	52.16
CDY22095	Canola	cytosol	56.14	51.96
KRH71501	Soybean	cytosol	37.08	51.02
KRH11292	Soybean	cytosol	55.08	47.97
CDY21934	Canola	plastid	56.36	27.88

Protein Annotations

EnsemblPlants:TraesCS1B01G105200.2	EnsemblPlantsGene:TraesCS1B01G105200	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	PANTHER:PTHR19847	PANTHER:PTHR19847:SF15	PFAM:PF00400	PFscan:PS50082	PFscan:PS50294
SEG:seg	SMART:SM00320	SUPFAM:SSF50978	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr1B:-:117170221..117178776

Molecular Weight (calculated)

53115.0 Da

IEP (calculated)

6.930

GRAVY (calculated)

-0.525

Length

472 amino acids

Sequence
(BLAST)

001: MAAAGRLRGR RRALKEVERE PEPFTIEEEV SHLTRVRSEP CPGTRAAIHG ARRKRDFSAF EMLSSRESGL SGGGGFCSAD RAYAAGKHLP SEGPWCVEDM
101: DSEAYVSQFS SDGSLLVAGF RGSRIRVYDA DRGWKVHKNI SCRSMRWTVS DIALSPDQRY LAYSSLSPIV HIVNVQNAGR ESDANVTEIH EGLEFCDDDE
201: YSFGIFSVKF SKDGREVVVG NNDCSIHVYD LGANKVSDRI RAHTSDVNTV TFADESGNLL YSGSDDNLCK VWDRRCLVRE KPAGVLTGHL DGITCIDSRG
301: DGRYLISNCK DQTIKLWDVR KMSATVKGRQ PRLYDWDYRW MTFPSHARYY KHPNDLSLAT YRGHSVLRTL IRCYFSPMHS TGQRYIYTGS SDDSVHIYDV
401: VTGATVKKLS WHGSIIRDCT WHPYCPTLVS SSWDGYLARW EASGDNEDPS VLTCDEQRTS PYDQTYGLSF AL

Best Arabidopsis Sequence Match ( AT4G03020.1 )
(BLAST)

001: MFFGPSEFDA DEMGYAMSRL EIESDLCDTG KDVCGVGSSS GSHRSSEHLA DLDHEISQVT KLKSSPHQRY SREVPGRHQL PVSTVRMLAG RESNFSGRGR
101: FSAADCCHML SRYLPTKGPW LVDQMDSRAY VSQFSTDGSL FIAGFQGSRI RIYNVEKGWK VQKDILAKSL RWTVTDTSLS PDQRNLVYAS MSPIVHIVDV
201: GSGSTESHAN VTEIHDGLDF SSDEDGGYSF GIFSVKFSTD GREVVAGSSD DSIYVYDLEA NRVSLRTVAH TSDVNTVCFA DESGNLILSG SDDNLCKVWD
301: RRCFIGRDKP AGVLVGHLEG VTFIDSRGDG RYFISNGKDQ TIKLWDIRKM SSSAPARHEV LRNYEWDYRW MDYPTEARDL KHPLDQSVST YKGHSVLRTL
401: IRCYFSPAHS TGQKYIYTGS NDSSVYIYDL VSGDKVAVLK HHSSPVRDCN WHPYYPTLIS SSWDGDLVKW EFPGSGEAPI MSKKRVRRRH FYY

Arabidopsis Description

Putative WD-repeat protein [Source:UniProtKB/TrEMBL;Acc:Q8LPI5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.