Factsheet for TraesCS1B01G263400.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G254400.1	Wheat	nucleus	95.86	96.07
TraesCS1A01G255000.1	Wheat	nucleus	95.86	96.07
HORVU1Hr1G060850.2	Barley	cytosol	66.01	95.28
Os05t0407200-01	Rice	nucleus	83.22	82.51
KXG21980	Sorghum	cytosol	76.25	76.09
Zm00001d010305_P004	Maize	cytosol	76.03	75.87
CDY67127	Canola	mitochondrion	14.81	66.02
GSMUA_Achr10P...	Banana	cytosol	63.83	60.79
CDX91264	Canola	cytosol	47.71	59.84
Solyc06g008880.2.1	Tomato	nucleus	60.35	58.44
VIT_07s0104g00900.t01	Wine grape	cytosol	61.66	58.23
KRH20977	Soybean	cytosol	60.13	58.11
Bra000849.1-P	Field mustard	nucleus	61.87	57.96
KRH31954	Soybean	cytosol	62.09	57.81
CDY72277	Canola	cytosol, nucleus	24.62	57.65
CDY17974	Canola	nucleus	61.44	57.43
CDX90908	Canola	nucleus	61.44	57.43
AT4G03020.1	Thale cress	nucleus	61.44	57.2
PGSC0003DMT400016081	Potato	nucleus	58.17	57.17
TraesCS1B01G105200.2	Wheat	mitochondrion, nucleus	57.95	56.36
Solyc01g080690.2.1	Tomato	cytosol	57.52	56.29
Bra034178.1-P	Field mustard	cytosol	61.87	55.69
CDY22095	Canola	cytosol	61.22	55.1
TraesCS1B01G083400.1	Wheat	cytosol	54.03	52.77
KRH71501	Soybean	cytosol	39.0	52.19
KRH11292	Soybean	cytosol	59.91	50.74
CDY21934	Canola	plastid	61.66	29.66

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:DCAF11/LEC14B	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PIRSF:PIRSF038135
PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19847	PANTHER:PTHR19847:SF15	SMART:SM00320
SUPFAM:SSF50978	EnsemblPlantsGene:TraesCS1B01G263400	EnsemblPlants:TraesCS1B01G263400.2	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	:	:	:	:	:

Description

No Description!

Coordinates

chr1B:+:463526116..463531678

Molecular Weight (calculated)

51402.6 Da

IEP (calculated)

6.708

GRAVY (calculated)

-0.536

Length

459 amino acids

Sequence
(BLAST)

001: MGYGMSRLHE GYSEPEGLNS DGSSSVEVNN DFSKLHNDIF HMTRLRSGPS ESIRKSMDRV SVTRLLRGRE VNSSGNGKFS PVDRAFVLGH YLPVDGPETV
101: DTMDSRAYVS QFSADGSLFV AGFQGSHIRI YDVDKGWEIH KDIHARSLRW TISDAALSPD QRFLVYSSLA PIIHIVNVGT ASRESYANVT DIHDGLDFSE
201: HEDVRYSFGL FSVKFSTDGR ELVAGSNDDS IYVYDLQANK VTLRLPAHTS DVNTVAFADE SGNLLYSGSD DNLCKVWDRR CLSTGEAAGV LTGHLHGITH
301: IDSRGDGRCF ISNGKDQAIK MWDIRKMTSN ADGSENRVPA WDYRYSRYPQ QYKQQKHPHD QSVATYRGHS VLRTLIRCYF SPTYSTGQKY IYTGSYDASV
401: CIYDVVSGSQ VAKLQGHHHL AVRDCSWHPS DPMLVSSSWD GQVARWSRTR SKQDTCELD

Best Arabidopsis Sequence Match ( AT4G03020.1 )
(BLAST)

001: MFFGPSEFDA DEMGYAMSRL EIESDLCDTG KDVCGVGSSS GSHRSSEHLA DLDHEISQVT KLKSSPHQRY SREVPGRHQL PVSTVRMLAG RESNFSGRGR
101: FSAADCCHML SRYLPTKGPW LVDQMDSRAY VSQFSTDGSL FIAGFQGSRI RIYNVEKGWK VQKDILAKSL RWTVTDTSLS PDQRNLVYAS MSPIVHIVDV
201: GSGSTESHAN VTEIHDGLDF SSDEDGGYSF GIFSVKFSTD GREVVAGSSD DSIYVYDLEA NRVSLRTVAH TSDVNTVCFA DESGNLILSG SDDNLCKVWD
301: RRCFIGRDKP AGVLVGHLEG VTFIDSRGDG RYFISNGKDQ TIKLWDIRKM SSSAPARHEV LRNYEWDYRW MDYPTEARDL KHPLDQSVST YKGHSVLRTL
401: IRCYFSPAHS TGQKYIYTGS NDSSVYIYDL VSGDKVAVLK HHSSPVRDCN WHPYYPTLIS SSWDGDLVKW EFPGSGEAPI MSKKRVRRRH FYY

Arabidopsis Description

Putative WD-repeat protein [Source:UniProtKB/TrEMBL;Acc:Q8LPI5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.