Factsheet for Solyc06g008880.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67127	Canola	mitochondrion	17.51	80.58
VIT_07s0104g00900.t01	Wine grape	cytosol	76.37	74.49
CDY72277	Canola	cytosol, nucleus	30.38	73.47
AT4G03020.1	Thale cress	nucleus	72.57	69.78
CDX91264	Canola	cytosol	53.8	69.67
CDY17974	Canola	nucleus	71.1	68.64
Bra000849.1-P	Field mustard	nucleus	70.89	68.57
CDX90908	Canola	nucleus	70.89	68.43
KRH31954	Soybean	cytosol	70.25	67.55
Bra034178.1-P	Field mustard	cytosol	72.15	67.06
CDY22095	Canola	cytosol	71.94	66.86
GSMUA_Achr3P23760_001	Banana	cytosol	51.9	66.85
Solyc01g080690.2.1	Tomato	cytosol	64.56	65.25
KRH71501	Soybean	cytosol	44.73	61.81
Os05t0144100-01	Rice	cytosol, nucleus	42.41	61.09
GSMUA_Achr10P...	Banana	cytosol	62.03	61.0
Os05t0407200-01	Rice	nucleus	59.49	60.91
TraesCS1A01G255000.1	Wheat	nucleus	58.44	60.48
TraesCS1B01G263400.2	Wheat	nucleus	58.44	60.35
TraesCS1D01G254400.1	Wheat	nucleus	58.23	60.26
Zm00001d010305_P004	Maize	cytosol	57.38	59.13
HORVU1Hr1G060850.2	Barley	cytosol	39.66	59.12
KXG21980	Sorghum	cytosol	57.17	58.91
TraesCS1A01G086800.2	Wheat	nucleus	56.12	56.48
TraesCS1D01G088200.1	Wheat	nucleus	56.12	56.36
TraesCS1B01G105200.2	Wheat	mitochondrion, nucleus	55.7	55.93
HORVU0Hr1G000250.10	Barley	cytosol	27.22	55.36
TraesCS1B01G083400.1	Wheat	cytosol	54.43	54.89
TraesCS1A01G065300.2	Wheat	cytosol	54.22	54.68
TraesCS1D01G066000.1	Wheat	cytosol	54.22	54.68
HORVU1Hr1G018790.5	Barley	cytosol	55.49	52.6
KXG21285	Sorghum	cytosol, mitochondrion, nucleus	52.95	51.65
Zm00001d010892_P013	Maize	plastid	53.59	50.0
Os01t0383700-01	Rice	nucleus	11.39	45.0
CDY21934	Canola	plastid	72.57	36.06

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:DCAF11/LEC14B	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:K4C3R8	PFAM:PF00400
PIRSF:PIRSF038135	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19847	PANTHER:PTHR19847:SF15
SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:Solyc06g008880.2	EnsemblPlants:Solyc06g008880.2.1	UniParc:UPI0002766AF8	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:

Description

No Description!

Coordinates

chr6:+:2824969..2831802

Molecular Weight (calculated)

53706.1 Da

IEP (calculated)

7.890

GRAVY (calculated)

-0.456

Length

474 amino acids

Sequence
(BLAST)

001: MGYSLSKLEV DTGLFDGSSS NHGVASSVHH ERPTNYLDHE ISQLTKLRSG PHENLSRILP GKKEVPVSAF KMLAAREANI SGRGRFSKAD CCHVLSKYLP
101: VSGPWIVDQM ETRAYVSQFS ADGSLFVAAF QGSHIRIYNV ERGWKVHKNI HAKSLRWTVT DTSLSPDQRH LVYATMSPIV HIVDVGSAAS ESVANITEIH
201: DGLLLSTDND DFGIFSVKFS TEGREVVAGS SDDAIYVYDL EANKLSLRIS AHNSDVNSVC FADESGHLIY SGSDDNLCKV WDRRCFRAKE KPAGVLMGHL
301: EGVTFLDSRG DGRYFISNSK DQSIKLWDIR KMSSHAARNI WFRNYEWDYR WMDYPAQARD VKHPYDQSIS TYKGHSVLRT LIRCYFSPEY STGQRYIYTG
401: SHDACVYIYD LVSGEQVAKL QHHRSTIRDC SWHPTYPMLV SSSWDGDVVK WEFPGNGEAP LPPKRKQIRR RHFF

Best Arabidopsis Sequence Match ( AT4G03020.1 )
(BLAST)

001: MFFGPSEFDA DEMGYAMSRL EIESDLCDTG KDVCGVGSSS GSHRSSEHLA DLDHEISQVT KLKSSPHQRY SREVPGRHQL PVSTVRMLAG RESNFSGRGR
101: FSAADCCHML SRYLPTKGPW LVDQMDSRAY VSQFSTDGSL FIAGFQGSRI RIYNVEKGWK VQKDILAKSL RWTVTDTSLS PDQRNLVYAS MSPIVHIVDV
201: GSGSTESHAN VTEIHDGLDF SSDEDGGYSF GIFSVKFSTD GREVVAGSSD DSIYVYDLEA NRVSLRTVAH TSDVNTVCFA DESGNLILSG SDDNLCKVWD
301: RRCFIGRDKP AGVLVGHLEG VTFIDSRGDG RYFISNGKDQ TIKLWDIRKM SSSAPARHEV LRNYEWDYRW MDYPTEARDL KHPLDQSVST YKGHSVLRTL
401: IRCYFSPAHS TGQKYIYTGS NDSSVYIYDL VSGDKVAVLK HHSSPVRDCN WHPYYPTLIS SSWDGDLVKW EFPGSGEAPI MSKKRVRRRH FYY

Arabidopsis Description

Putative WD-repeat protein [Source:UniProtKB/TrEMBL;Acc:Q8LPI5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.