Factsheet for HORVU1Hr1G060850.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67127	Canola	mitochondrion	21.7	66.99
TraesCS1B01G263400.2	Wheat	nucleus	95.28	66.01
TraesCS1A01G255000.1	Wheat	nucleus	90.88	63.1
TraesCS1D01G254400.1	Wheat	nucleus	90.57	62.88
Os05t0407200-01	Rice	nucleus	83.96	57.67
Zm00001d010305_P004	Maize	cytosol	76.42	52.83
KXG21980	Sorghum	cytosol	76.42	52.83
GSMUA_Achr10P...	Banana	cytosol	64.15	42.32
VIT_07s0104g00900.t01	Wine grape	cytosol	63.21	41.36
Bra000849.1-P	Field mustard	nucleus	63.52	41.22
CDY17974	Canola	nucleus	62.89	40.73
CDX90908	Canola	nucleus	62.89	40.73
AT4G03020.1	Thale cress	nucleus	62.26	40.16
KRH20977	Soybean	cytosol	59.75	40.0
CDX91264	Canola	cytosol	45.91	39.89
KRH31954	Soybean	cytosol	61.64	39.76
Solyc06g008880.2.1	Tomato	nucleus	59.12	39.66
Bra034178.1-P	Field mustard	cytosol	63.52	39.61
CDY22095	Canola	cytosol	62.89	39.22
Solyc01g080690.2.1	Tomato	cytosol	56.92	38.59
PGSC0003DMT400016081	Potato	nucleus	56.6	38.54
HORVU1Hr1G018790.5	Barley	cytosol	57.23	36.4
KRH11292	Soybean	cytosol	59.75	35.06
KRH71501	Soybean	cytosol	29.87	27.7
CDY21934	Canola	plastid	63.21	21.07
CDY72277	Canola	cytosol, nucleus	9.43	15.31
HORVU0Hr1G000250.10	Barley	cytosol	9.75	13.3

Protein Annotations

EnsemblPlants:HORVU1Hr1G060850.2	EnsemblPlantsGene:HORVU1Hr1G060850	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	PANTHER:PTHR19847	PANTHER:PTHR19847:SF15	PFAM:PF00400	PFscan:PS50082	PFscan:PS50294
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000B4640A3	UniProt:A0A287FUZ0	MapMan:35.1	:

Description

No Description!

Coordinates

chrchr1H:-:441911313..441920809

Molecular Weight (calculated)

35046.6 Da

IEP (calculated)

6.342

GRAVY (calculated)

-0.433

Length

318 amino acids

Sequence
(BLAST)

001: MGYGMSRLHE GYSEHEGQNS DGSSSVEVNN DFSKLNNDIF HMTRLRSGPS ESIRKSMDRV SVTRLLRGRE VNSSGNGKFS PVDRAFVLGH YLPVDGPETV
101: DRMDSRAYVS HFSADGSLFV AGFQGSHIRI YDVDKGWEVH KDIHARSLRW TISDASLSPD QRFLVYSSLA PIIHIVNVGT ASRESYANVT DIHDGLDFSE
201: HEDVRYSFGL FSVKFSTDGR ELVAGSNDNS IYVYDIQANK VTLRLPAHTS DVNTVAFADE SGNLIYSGSD DNLCKVWDRR CLSTGEAAGV LTGHVHGITH
301: IDSRGDGRCF ISNGKAGK

Best Arabidopsis Sequence Match ( AT4G03020.1 )
(BLAST)

001: MFFGPSEFDA DEMGYAMSRL EIESDLCDTG KDVCGVGSSS GSHRSSEHLA DLDHEISQVT KLKSSPHQRY SREVPGRHQL PVSTVRMLAG RESNFSGRGR
101: FSAADCCHML SRYLPTKGPW LVDQMDSRAY VSQFSTDGSL FIAGFQGSRI RIYNVEKGWK VQKDILAKSL RWTVTDTSLS PDQRNLVYAS MSPIVHIVDV
201: GSGSTESHAN VTEIHDGLDF SSDEDGGYSF GIFSVKFSTD GREVVAGSSD DSIYVYDLEA NRVSLRTVAH TSDVNTVCFA DESGNLILSG SDDNLCKVWD
301: RRCFIGRDKP AGVLVGHLEG VTFIDSRGDG RYFISNGKDQ TIKLWDIRKM SSSAPARHEV LRNYEWDYRW MDYPTEARDL KHPLDQSVST YKGHSVLRTL
401: IRCYFSPAHS TGQKYIYTGS NDSSVYIYDL VSGDKVAVLK HHSSPVRDCN WHPYYPTLIS SSWDGDLVKW EFPGSGEAPI MSKKRVRRRH FYY

Arabidopsis Description

Putative WD-repeat protein [Source:UniProtKB/TrEMBL;Acc:Q8LPI5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.