Factsheet for HORVU0Hr1G000250.10

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
TargetP:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72277	Canola	cytosol, nucleus	53.65	63.78
TraesCS1D01G066000.1	Wheat	cytosol	84.55	41.91
TraesCS1A01G065300.2	Wheat	cytosol	84.55	41.91
TraesCS1B01G083400.1	Wheat	cytosol	84.12	41.7
KRH71501	Soybean	cytosol	51.07	34.69
GSMUA_Achr3P23760_001	Banana	cytosol	54.51	34.51
CDX91264	Canola	cytosol	51.07	32.51
HORVU1Hr1G018790.5	Barley	cytosol	60.52	28.2
Solyc06g008880.2.1	Tomato	nucleus	55.36	27.22
Bra000849.1-P	Field mustard	nucleus	57.08	27.14
CDX90908	Canola	nucleus	57.08	27.09
CDY17974	Canola	nucleus	56.22	26.68
AT4G03020.1	Thale cress	nucleus	56.22	26.57
VIT_07s0104g00900.t01	Wine grape	cytosol	54.94	26.34
KRH31954	Soybean	cytosol	55.36	26.17
KRH20977	Soybean	cytosol	53.22	26.11
Bra034178.1-P	Field mustard	cytosol	57.08	26.08
CDY22095	Canola	cytosol	56.65	25.88
PGSC0003DMT400016081	Potato	nucleus	50.64	25.27
Solyc01g080690.2.1	Tomato	cytosol	49.36	24.52
KRH11292	Soybean	cytosol	52.36	22.51
CDY21934	Canola	plastid	57.08	13.94
HORVU1Hr1G060850.2	Barley	cytosol	13.3	9.75
CDY67127	Canola	mitochondrion	1.29	2.91
Os01t0383700-01	Rice	nucleus	0.0	0.0

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A287DTK6	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:HORVU0Hr1G000250	EnsemblPlants:HORVU0Hr1G000250.10	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19847	PANTHER:PTHR19847:SF15	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI000B4826B1	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

No Description!

Coordinates

chrchrUn:-:697815..700352

Molecular Weight (calculated)

26840.7 Da

IEP (calculated)

7.308

GRAVY (calculated)

-0.455

Length

233 amino acids

Sequence
(BLAST)

001: VMLQSFRSLF TDSSHVKFGL PRPLLTLSGL ELPEVWDRRC HNRAKPVGVL AGHLDGVTFI DSHGDGHYFI SNCKDQTIKL WDIRKLSSAT KDCTPKAYEW
101: DYRWMTYPSE ARFLKHPYDQ SLATFRGHSV LRTLIRCYFS PMHSTGQRYI YTGSSDQCVY IYDVATGNVV ETLKWHGSIV RDCSWHPHLP TLVSSSWDGY
201: LVRWEATEEE DDDPTTLNKG KQKMCAEGYT FTL

Best Arabidopsis Sequence Match ( AT4G03020.1 )
(BLAST)

001: MFFGPSEFDA DEMGYAMSRL EIESDLCDTG KDVCGVGSSS GSHRSSEHLA DLDHEISQVT KLKSSPHQRY SREVPGRHQL PVSTVRMLAG RESNFSGRGR
101: FSAADCCHML SRYLPTKGPW LVDQMDSRAY VSQFSTDGSL FIAGFQGSRI RIYNVEKGWK VQKDILAKSL RWTVTDTSLS PDQRNLVYAS MSPIVHIVDV
201: GSGSTESHAN VTEIHDGLDF SSDEDGGYSF GIFSVKFSTD GREVVAGSSD DSIYVYDLEA NRVSLRTVAH TSDVNTVCFA DESGNLILSG SDDNLCKVWD
301: RRCFIGRDKP AGVLVGHLEG VTFIDSRGDG RYFISNGKDQ TIKLWDIRKM SSSAPARHEV LRNYEWDYRW MDYPTEARDL KHPLDQSVST YKGHSVLRTL
401: IRCYFSPAHS TGQKYIYTGS NDSSVYIYDL VSGDKVAVLK HHSSPVRDCN WHPYYPTLIS SSWDGDLVKW EFPGSGEAPI MSKKRVRRRH FYY

Arabidopsis Description

Putative WD-repeat protein [Source:UniProtKB/TrEMBL;Acc:Q8LPI5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.