Factsheet for GSMUA_Achr3P23760_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72277	Canola	cytosol, nucleus	34.51	64.8
Os05t0144100-01	Rice	cytosol, nucleus	54.89	61.4
CDX91264	Canola	cytosol	60.05	60.38
KRH71501	Soybean	cytosol	50.82	54.52
HORVU0Hr1G000250.10	Barley	cytosol	34.51	54.51
GSMUA_Achr10P...	Banana	cytosol	68.75	52.49
PGSC0003DMT400016081	Potato	nucleus	66.58	52.46
VIT_07s0104g00900.t01	Wine grape	cytosol	69.02	52.26
KRH20977	Soybean	cytosol	67.39	52.21
Solyc06g008880.2.1	Tomato	nucleus	66.85	51.9
Solyc01g080690.2.1	Tomato	cytosol	66.03	51.81
AT4G03020.1	Thale cress	nucleus	68.75	51.32
TraesCS1D01G088200.1	Wheat	nucleus	65.76	51.27
CDY17974	Canola	nucleus	68.21	51.12
Bra000849.1-P	Field mustard	nucleus	67.93	51.02
TraesCS1A01G086800.2	Wheat	nucleus	65.22	50.96
CDX90908	Canola	nucleus	67.93	50.92
TraesCS1B01G105200.2	Wheat	mitochondrion, nucleus	65.22	50.85
KRH31954	Soybean	cytosol	67.39	50.3
CDY67127	Canola	mitochondrion	13.86	49.51
Bra034178.1-P	Field mustard	cytosol	68.21	49.22
TraesCS1A01G065300.2	Wheat	cytosol	62.5	48.94
CDY22095	Canola	cytosol	67.66	48.82
TraesCS1B01G083400.1	Wheat	cytosol	61.96	48.51
HORVU1Hr1G018790.5	Barley	cytosol	65.76	48.4
TraesCS1D01G066000.1	Wheat	cytosol	61.68	48.3
Zm00001d010892_P013	Maize	plastid	64.67	46.85
KXG21285	Sorghum	cytosol, mitochondrion, nucleus	61.41	46.5
KRH11292	Soybean	cytosol	67.39	45.76
CDY21934	Canola	plastid	68.21	26.31
Os01t0383700-01	Rice	nucleus	3.8	11.67

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr3G23760_001
EnsemblPlants:GSMUA_Achr3P23760_001	EnsemblPlants:GSMUA_Achr3T23760_001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M0SH92
PFAM:PF00400	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19847	PANTHER:PTHR19847:SF15	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI000295C583	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf

Description

LEC14B homolog [Source:GMGC_GENE;Acc:GSMUA_Achr3G23760_001]

Coordinates

chr3:-:24490417..24494795

Molecular Weight (calculated)

41820.6 Da

IEP (calculated)

6.919

GRAVY (calculated)

-0.530

Length

368 amino acids

Sequence
(BLAST)

001: MNSEAYVSQF SIDGSLLVAG FQGSRIRIYN VDNGWKVQKD INAQSLRWTI TDTALSPDQR HLVYSSLTPL VHIVNVRTGM TDSQANITEI HEHLDFSVDG
101: DRDSFNIFSI KFSTDGRELV AGGSDDSIYV YDLEANKLAM RIIAHTDDVN TVSFADETGH VMFSGSDDNL CKVWDRRCVA ATGNPAGFLE GHLEGITFID
201: SRGDGHYFIS NSKDQTTKLW DIRRMSSTTK SRTPRTYYDW DYRWMDYPAE ARNQKHPCDR SVATYKGHSV LRTLIRCYFS PTHSTGQKYI YTGSFDKCVY
301: IYDVVTGANV AKLAWHNDAI RDCSWHPYYP VLVSSSWDHA VTRWEFPGSP ADSAVKRKTS QRRREGHP

Best Arabidopsis Sequence Match ( AT4G03020.1 )
(BLAST)

001: MFFGPSEFDA DEMGYAMSRL EIESDLCDTG KDVCGVGSSS GSHRSSEHLA DLDHEISQVT KLKSSPHQRY SREVPGRHQL PVSTVRMLAG RESNFSGRGR
101: FSAADCCHML SRYLPTKGPW LVDQMDSRAY VSQFSTDGSL FIAGFQGSRI RIYNVEKGWK VQKDILAKSL RWTVTDTSLS PDQRNLVYAS MSPIVHIVDV
201: GSGSTESHAN VTEIHDGLDF SSDEDGGYSF GIFSVKFSTD GREVVAGSSD DSIYVYDLEA NRVSLRTVAH TSDVNTVCFA DESGNLILSG SDDNLCKVWD
301: RRCFIGRDKP AGVLVGHLEG VTFIDSRGDG RYFISNGKDQ TIKLWDIRKM SSSAPARHEV LRNYEWDYRW MDYPTEARDL KHPLDQSVST YKGHSVLRTL
401: IRCYFSPAHS TGQKYIYTGS NDSSVYIYDL VSGDKVAVLK HHSSPVRDCN WHPYYPTLIS SSWDGDLVKW EFPGSGEAPI MSKKRVRRRH FYY

Arabidopsis Description

Putative WD-repeat protein [Source:UniProtKB/TrEMBL;Acc:Q8LPI5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.