CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72277	Canola	cytosol, nucleus	39.65	69.39
KRH31954	Soybean	cytosol	80.17	55.78
HORVU0Hr1G000250.10	Barley	cytosol	34.69	51.07
CDX91264	Canola	cytosol	54.23	50.82
GSMUA_Achr3P23760_001	Banana	cytosol	54.52	50.82
Os05t0144100-01	Rice	cytosol, nucleus	44.31	46.2
VIT_07s0104g00900.t01	Wine grape	cytosol	63.85	45.06
Solyc06g008880.2.1	Tomato	nucleus	61.81	44.73
AT4G03020.1	Thale cress	nucleus	62.97	43.81
CDY17974	Canola	nucleus	62.39	43.58
Bra000849.1-P	Field mustard	nucleus	62.1	43.47
CDX90908	Canola	nucleus	62.1	43.38
KRH20977	Soybean	cytosol	59.77	43.16
Bra034178.1-P	Field mustard	cytosol	62.97	42.35
PGSC0003DMT400016081	Potato	nucleus	57.43	42.18
CDY22095	Canola	cytosol	62.39	41.96
KXG21980	Sorghum	cytosol	54.81	40.87
Zm00001d010305_P004	Maize	cytosol	54.81	40.87
GSMUA_Achr10P...	Banana	cytosol	56.85	40.46
Os05t0407200-01	Rice	nucleus	53.35	39.52
TraesCS1A01G255000.1	Wheat	nucleus	52.19	39.08
TraesCS1B01G263400.2	Wheat	nucleus	52.19	39.0
TraesCS1D01G254400.1	Wheat	nucleus	51.9	38.86
TraesCS1A01G086800.2	Wheat	nucleus	51.6	37.58
KRH11292	Soybean	cytosol	59.18	37.45
TraesCS1D01G088200.1	Wheat	nucleus	51.31	37.29
TraesCS1B01G105200.2	Wheat	mitochondrion, nucleus	51.02	37.08
TraesCS1D01G066000.1	Wheat	cytosol	50.73	37.02
CDY67127	Canola	mitochondrion	11.08	36.89
TraesCS1B01G083400.1	Wheat	cytosol	50.15	36.6
TraesCS1A01G065300.2	Wheat	cytosol	49.56	36.17
KXG21285	Sorghum	cytosol, mitochondrion, nucleus	50.73	35.8
HORVU1Hr1G018790.5	Barley	cytosol	51.31	35.2
Zm00001d010892_P013	Maize	plastid	49.27	33.27
HORVU1Hr1G060850.2	Barley	cytosol	27.7	29.87
CDY21934	Canola	plastid	62.97	22.64
Os01t0383700-01	Rice	nucleus	0.29	0.83

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A0R0KWJ8	EMBL:ACUP02000901	EnsemblPlantsGene:GLYMA_02G151000	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRH71501
ProteinID:KRH71501	ProteinID:KRH71501.1	PFAM:PF00400	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19847
PANTHER:PTHR19847:SF15	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0006ED83B6	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:15541144..15546469

Molecular Weight (calculated)

38827.6 Da

IEP (calculated)

8.136

GRAVY (calculated)

-0.372

Length

343 amino acids

Sequence
(BLAST)

001: MYATSSARYI DEMGYAVNPG SHIRIYNVDR GWKVQKNILA KNLRWTITDT SLSPDQRYLV YASMSPIVHI VNAGSAETES LANVTVITTN ATPPAPTNSI
101: NIAIALNATK YYRAIDIKKL DFHDMCQSFL SDVNTVRFAD ETSHLIYSGS DDSFCKPAGV LMGHLEGITF IDTRGDGLYF ISNGKDQTFK LWDIRKMSSN
201: VTGNPGYRSY EWDYRWMDYP PQAKDLTHPC DQSVATYRGH SVLRTLIRCY FSPAFSTGQK YIYTGSHHAC VYIYDLVSGA QVATLKHHKS PLRDCSWHPF
301: HTTLVSSSWD GDVVKWEFAG SGDTPASSTK KRVWTRHFYE HYL

Best Arabidopsis Sequence Match ( AT4G03020.1 )
(BLAST)

001: MFFGPSEFDA DEMGYAMSRL EIESDLCDTG KDVCGVGSSS GSHRSSEHLA DLDHEISQVT KLKSSPHQRY SREVPGRHQL PVSTVRMLAG RESNFSGRGR
101: FSAADCCHML SRYLPTKGPW LVDQMDSRAY VSQFSTDGSL FIAGFQGSRI RIYNVEKGWK VQKDILAKSL RWTVTDTSLS PDQRNLVYAS MSPIVHIVDV
201: GSGSTESHAN VTEIHDGLDF SSDEDGGYSF GIFSVKFSTD GREVVAGSSD DSIYVYDLEA NRVSLRTVAH TSDVNTVCFA DESGNLILSG SDDNLCKVWD
301: RRCFIGRDKP AGVLVGHLEG VTFIDSRGDG RYFISNGKDQ TIKLWDIRKM SSSAPARHEV LRNYEWDYRW MDYPTEARDL KHPLDQSVST YKGHSVLRTL
401: IRCYFSPAHS TGQKYIYTGS NDSSVYIYDL VSGDKVAVLK HHSSPVRDCN WHPYYPTLIS SSWDGDLVKW EFPGSGEAPI MSKKRVRRRH FYY

Arabidopsis Description

Putative WD-repeat protein [Source:UniProtKB/TrEMBL;Acc:Q8LPI5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.