Factsheet for Zm00001d010892_P013

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG21285	Sorghum	cytosol, mitochondrion, nucleus	77.95	81.48
Os05t0144100-01	Rice	cytosol, nucleus	47.24	72.95
TraesCS1B01G105200.2	Wheat	mitochondrion, nucleus	64.37	69.28
TraesCS1A01G086800.2	Wheat	nucleus	63.98	69.0
TraesCS1D01G088200.1	Wheat	nucleus	63.78	68.64
HORVU1Hr1G018790.5	Barley	cytosol	65.75	66.8
GSMUA_Achr3P23760_001	Banana	cytosol	46.85	64.67
CDY72277	Canola	cytosol, nucleus	24.21	62.76
CDX91264	Canola	cytosol	41.14	57.1
CDY67127	Canola	mitochondrion	11.02	54.37
AT4G03020.1	Thale cress	nucleus	52.17	53.75
Zm00001d010305_P004	Maize	cytosol	48.62	53.7
Solyc06g008880.2.1	Tomato	nucleus	50.0	53.59
PGSC0003DMT400016081	Potato	nucleus	48.62	52.89
KRH20977	Soybean	cytosol	49.41	52.84
Bra000849.1-P	Field mustard	nucleus	50.59	52.45
CDY17974	Canola	nucleus	50.59	52.34
CDX90908	Canola	nucleus	50.59	52.34
Solyc01g080690.2.1	Tomato	cytosol	48.23	52.24
VIT_07s0104g00900.t01	Wine grape	cytosol	49.02	51.23
Bra034178.1-P	Field mustard	cytosol	51.18	50.98
KRH31954	Soybean	cytosol	49.41	50.91
CDY22095	Canola	cytosol	50.98	50.78
KRH71501	Soybean	cytosol	33.27	49.27
KRH11292	Soybean	cytosol	49.02	45.94
CDY21934	Canola	plastid	51.38	27.36

Protein Annotations

EntrezGene:100192041	Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A1D6FUQ9	ProteinID:AQK95192.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19847	PANTHER:PTHR19847:SF15	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI000843B23D	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d010892
EnsemblPlants:Zm00001d010892_P013	EnsemblPlants:Zm00001d010892_T013	SEG:seg	:	:	:

Description

transducin family protein / WD-40 repeat family protein

Coordinates

chr8:+:132353694..132361349

Molecular Weight (calculated)

56261.9 Da

IEP (calculated)

8.164

GRAVY (calculated)

-0.427

Length

508 amino acids

Sequence
(BLAST)

001: MGPACHGGTS SPAIQRGILL DWPDPSVLVS ASMQGRMRGA RRSARGESSR KAAGREVEPF TLCGEMSHLT RATSEPCRRA RGAAFARRAR PFSAYELVSA
101: REAGRAGGAG FSAADRAYLG RQHIPTKGPW GVDDVESEAY VSQFSADGSL LIAGFRGSRI RVYDAEKGWK IHKDISCRSV HWTVSDIALS PDQRFLAYAS
201: LTPIVHIVNV QNAGKESHAN ITEIHEGLDL TGGDEDEDFG IFSVKFSKDG KEVVVGNNEK SIYVYDLSAN KVSARIRAHK ADVNAVTFAD ETGNVLYSGS
301: DDSLCKVWDR RCLSGEKSAG ILTGHLDGVT FIDSRGDGRY FISNCKDQRI KLWDIRKMSS VVRSRPVSLV DWDYRWMPFP SEAHNLKHPG DQSVATYRGH
401: SVLRTLIRCY FSPVHSTGQR YIYTGSSDKS VHIYDVVTGE AVKRLSWHGS IIRDCTWHPY YPTLVSSSWD GFVARWEASG DDDDHSVLVA DEMRGSPYYR
501: RYGDPLVM

Best Arabidopsis Sequence Match ( AT4G03020.1 )
(BLAST)

001: MFFGPSEFDA DEMGYAMSRL EIESDLCDTG KDVCGVGSSS GSHRSSEHLA DLDHEISQVT KLKSSPHQRY SREVPGRHQL PVSTVRMLAG RESNFSGRGR
101: FSAADCCHML SRYLPTKGPW LVDQMDSRAY VSQFSTDGSL FIAGFQGSRI RIYNVEKGWK VQKDILAKSL RWTVTDTSLS PDQRNLVYAS MSPIVHIVDV
201: GSGSTESHAN VTEIHDGLDF SSDEDGGYSF GIFSVKFSTD GREVVAGSSD DSIYVYDLEA NRVSLRTVAH TSDVNTVCFA DESGNLILSG SDDNLCKVWD
301: RRCFIGRDKP AGVLVGHLEG VTFIDSRGDG RYFISNGKDQ TIKLWDIRKM SSSAPARHEV LRNYEWDYRW MDYPTEARDL KHPLDQSVST YKGHSVLRTL
401: IRCYFSPAHS TGQKYIYTGS NDSSVYIYDL VSGDKVAVLK HHSSPVRDCN WHPYYPTLIS SSWDGDLVKW EFPGSGEAPI MSKKRVRRRH FYY

Arabidopsis Description

Putative WD-repeat protein [Source:UniProtKB/TrEMBL;Acc:Q8LPI5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.