CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17974	Canola	nucleus	99.19	99.19
CDY72277	Canola	cytosol, nucleus	39.31	98.47
CDY67127	Canola	mitochondrion	20.57	98.06
AT4G03020.1	Thale cress	nucleus	90.02	89.66
CDY22095	Canola	cytosol	88.19	84.9
CDX91264	Canola	cytosol	62.93	84.43
VIT_07s0104g00900.t01	Wine grape	cytosol	73.93	74.69
KRH31954	Soybean	cytosol	72.51	72.21
Solyc06g008880.2.1	Tomato	nucleus	68.43	70.89
GSMUA_Achr3P23760_001	Banana	cytosol	50.92	67.93
PGSC0003DMT400016081	Potato	nucleus	63.14	66.38
HORVU1Hr1G060850.2	Barley	cytosol	40.73	62.89
GSMUA_Achr10P...	Banana	cytosol	61.71	62.86
Os05t0144100-01	Rice	cytosol, nucleus	41.96	62.61
KRH71501	Soybean	cytosol	43.38	62.1
TraesCS1D01G254400.1	Wheat	nucleus	57.64	61.79
TraesCS1A01G255000.1	Wheat	nucleus	57.64	61.79
TraesCS1B01G263400.2	Wheat	nucleus	57.43	61.44
Os05t0407200-01	Rice	nucleus	56.62	60.04
Zm00001d010305_P004	Maize	cytosol	56.01	59.78
KXG21980	Sorghum	cytosol	55.8	59.57
TraesCS1B01G083400.1	Wheat	cytosol	54.79	57.23
HORVU0Hr1G000250.10	Barley	cytosol	27.09	57.08
TraesCS1D01G066000.1	Wheat	cytosol	54.58	57.02
TraesCS1A01G065300.2	Wheat	cytosol	54.18	56.6
TraesCS1D01G088200.1	Wheat	nucleus	54.18	56.36
TraesCS1A01G086800.2	Wheat	nucleus	53.97	56.26
TraesCS1B01G105200.2	Wheat	mitochondrion, nucleus	53.36	55.51
HORVU1Hr1G018790.5	Barley	cytosol	54.18	53.2
KXG21285	Sorghum	cytosol, mitochondrion, nucleus	52.14	52.67
Zm00001d010892_P013	Maize	plastid	52.34	50.59
CDY21934	Canola	plastid	88.59	45.6
Os01t0383700-01	Rice	nucleus	10.18	41.67

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlants:CDX90908	ProteinID:CDX90908	ProteinID:CDX90908.1	InterPro:DCAF11/LEC14B
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00151643001	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PIRSF:PIRSF038135	PRINTS:PR00320	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19847	PANTHER:PTHR19847:SF15	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EF3A66
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

BnaA03g25880D

Coordinates

chrLK031864:+:1260991..1263889

Molecular Weight (calculated)

55041.3 Da

IEP (calculated)

6.885

GRAVY (calculated)

-0.497

Length

491 amino acids

Sequence
(BLAST)

001: MFFGPSEVDV DDMGYAMSRL ETEPDAGKDF SGVGSSSSSG SHISSEHLDH DEINQITKLK SSPHQRYSRV VPGRHELPVS TVRMIAGRES NFSGRGGRFS
101: AADCCHMLSR YLPVKGPWLV DQMNSRAYVS QFSTDGSLFI AGFQGSHIRI YNVEKGWKVQ KDILAKSLRW TVTDTSLSPD QRNLVYASMS PMVHIVDVGS
201: GTTESHANVT EIHDGLDFSS DEDGGYSFGI FSVKFSTDGR ELVAGSSDES IYVYDLEANK VSLRTVAHTS DVNTVCFADE SGNLILSGGD DNLCKVWDRR
301: CFIGRDKAAG VLVGHLEGVT FIDSRGDGRY FISNGKDQTI KLWDIRKMSS TPPAKHDVIR NYEWDYRWME YPPEARDLKH PFDQSVATYK GHSVLRTLIR
401: CYFSPSHSTG QKYIYTGSND SSVYIYDLVS GDKVAVLKHH SSPVRDCNWH PHYPTLISSS WDGDLVKWEF PGRGEAPITS KKRVRRRHLY Y

Best Arabidopsis Sequence Match ( AT4G03020.1 )
(BLAST)

001: MFFGPSEFDA DEMGYAMSRL EIESDLCDTG KDVCGVGSSS GSHRSSEHLA DLDHEISQVT KLKSSPHQRY SREVPGRHQL PVSTVRMLAG RESNFSGRGR
101: FSAADCCHML SRYLPTKGPW LVDQMDSRAY VSQFSTDGSL FIAGFQGSRI RIYNVEKGWK VQKDILAKSL RWTVTDTSLS PDQRNLVYAS MSPIVHIVDV
201: GSGSTESHAN VTEIHDGLDF SSDEDGGYSF GIFSVKFSTD GREVVAGSSD DSIYVYDLEA NRVSLRTVAH TSDVNTVCFA DESGNLILSG SDDNLCKVWD
301: RRCFIGRDKP AGVLVGHLEG VTFIDSRGDG RYFISNGKDQ TIKLWDIRKM SSSAPARHEV LRNYEWDYRW MDYPTEARDL KHPLDQSVST YKGHSVLRTL
401: IRCYFSPAHS TGQKYIYTGS NDSSVYIYDL VSGDKVAVLK HHSSPVRDCN WHPYYPTLIS SSWDGDLVKW EFPGSGEAPI MSKKRVRRRH FYY

Arabidopsis Description

Putative WD-repeat protein [Source:UniProtKB/TrEMBL;Acc:Q8LPI5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.