CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22095	Canola	cytosol	51.36	96.08
CDY67127	Canola	mitochondrion	10.27	95.15
AT4G03020.1	Thale cress	nucleus	47.8	92.49
CDY72277	Canola	cytosol, nucleus	18.97	92.35
CDY17974	Canola	nucleus	45.7	88.8
CDX90908	Canola	nucleus	45.6	88.59
CDX91264	Canola	cytosol	32.49	84.7
VIT_07s0104g00900.t01	Wine grape	cytosol	38.68	75.93
KRH31954	Soybean	cytosol	38.36	74.24
Solyc06g008880.2.1	Tomato	nucleus	36.06	72.57
GSMUA_Achr3P23760_001	Banana	cytosol	26.31	68.21
PGSC0003DMT400016081	Potato	nucleus	33.02	67.45
HORVU1Hr1G060850.2	Barley	cytosol	21.07	63.21
KRH71501	Soybean	cytosol	22.64	62.97
GSMUA_Achr10P...	Banana	cytosol	31.55	62.45
TraesCS1D01G254400.1	Wheat	nucleus	29.98	62.45
TraesCS1A01G255000.1	Wheat	nucleus	29.98	62.45
TraesCS1B01G263400.2	Wheat	nucleus	29.66	61.66
Os05t0407200-01	Rice	nucleus	29.77	61.34
Os05t0144100-01	Rice	cytosol, nucleus	21.07	61.09
Zm00001d010305_P004	Maize	cytosol	29.14	60.43
KXG21980	Sorghum	cytosol	29.04	60.22
TraesCS1B01G083400.1	Wheat	cytosol	28.62	58.09
TraesCS1D01G066000.1	Wheat	cytosol	28.41	57.66
TraesCS1A01G065300.2	Wheat	cytosol	28.3	57.45
TraesCS1D01G088200.1	Wheat	nucleus	28.3	57.2
HORVU0Hr1G000250.10	Barley	cytosol	13.94	57.08
TraesCS1A01G086800.2	Wheat	nucleus	28.09	56.9
TraesCS1B01G105200.2	Wheat	mitochondrion, nucleus	27.88	56.36
HORVU1Hr1G018790.5	Barley	cytosol	28.41	54.2
KXG21285	Sorghum	cytosol, mitochondrion, nucleus	26.94	52.88
Zm00001d010892_P013	Maize	plastid	27.36	51.38
Os01t0383700-01	Rice	nucleus	5.87	46.67

Protein Annotations

Gene3D:2.120.10.80	Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A078G978	EnsemblPlants:CDY21934	ProteinID:CDY21934
ProteinID:CDY21934.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00018262001	InterPro:IPR001680	InterPro:IPR001810	InterPro:IPR015915	InterPro:IPR015943	InterPro:IPR017986
InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF00400	PFAM:PF00646	PFAM:PF01344	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19847	PANTHER:PTHR19847:SF15	SMART:SM00320	SMART:SM00612	SUPFAM:SSF117281
SUPFAM:SSF50978	SUPFAM:SSF81383	UniParc:UPI0004EF0734	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

BnaC09g00400DBnaC09g00400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G978]

Coordinates

chrLK032126:-:203095..208401

Molecular Weight (calculated)

107355.0 Da

IEP (calculated)

8.479

GRAVY (calculated)

-0.387

Length

954 amino acids

Sequence
(BLAST)

001: MPLPIFSSRL QSSSSSSSSS SSSSSSSRPY LPRPKPRIDP TLTLIPGLSN DVARLILSFI PYPHIHRLKS TSKSWYAFLS SKTLISLRRR DDNRHRLSHL
101: LCVFPQDPSI SPPFLFDPIT LSWRSLPLMP CNPHVYGLCN FVAVGVGSDL YVLGGSAFDT RSYPLDRPLP SSSVFRYSFV KMAWERLAPM LSPRGSFACA
201: AIGGDRIVVA GGGSRHSLFG AAGSRMSSVE VYDVERDEWR EMDELPRFRA GCVGFVVGGE EREFWVMGGY CGSRTVSGVL PVDEYCKDAV VMNLDGGEIE
301: KWRLVGDMWG EGESPKLGKI VAVESSFYML DREWILRYEM GSNRWVKESS VPKKAHFDKP VGFVAVNGEL HVMILLDGYN LMDTRQRSNA GCLMIHVYDP
401: KKRTWRSVVA KPPFNHQLDF RTTRRRDQRS FLREPLRVLL LRTGELVVRA NVRWWLSPIM FSGPSDSDTD EMGYAMSRLE IESDLCDAGK GYYGVGSSSG
501: SSHRSSERLG DLDNEISQVT KLKSCPHERF SRQVPGRHQL PVSTVKMLAG RESNFSGRGG RFSSADRCHI LSRYLPVKGP WLVDQMDSRA YVSQFSTDGS
601: LFIAGFQGSH IRIYNVEKGW KVQKDILAKS LRWTVTDTSL SPDQRNLVYA SMSPIVHIVD VGSGTTESHA NVTEIHDGLD FSSEEDGGYS FGIFSVKFST
701: DGRELVAGSS DDSIYVYDLE ANRVSLRTVA HTSDVNTVCF ADESGHLILS GGDDNLCKVW DRRCFIGRDK PAGVLVGHLE GVTFIDSRGD GRYFISNGKD
801: QTIKLWDIRK MSSTVPARNE VHRNYEWDYR WMDYPSEARD LKHPYDQSVS TYKGHSVLRT LIRCYFSPAH STGQKYIYTG SNDSSVYIYD LESGDKAAVL
901: KHHSSPVRDC NWHPHYPTLI SSSWDGDLVK WEFPGSGEAP IMSKKRVRRR HFYY

Best Arabidopsis Sequence Match ( AT4G03020.1 )
(BLAST)

001: MFFGPSEFDA DEMGYAMSRL EIESDLCDTG KDVCGVGSSS GSHRSSEHLA DLDHEISQVT KLKSSPHQRY SREVPGRHQL PVSTVRMLAG RESNFSGRGR
101: FSAADCCHML SRYLPTKGPW LVDQMDSRAY VSQFSTDGSL FIAGFQGSRI RIYNVEKGWK VQKDILAKSL RWTVTDTSLS PDQRNLVYAS MSPIVHIVDV
201: GSGSTESHAN VTEIHDGLDF SSDEDGGYSF GIFSVKFSTD GREVVAGSSD DSIYVYDLEA NRVSLRTVAH TSDVNTVCFA DESGNLILSG SDDNLCKVWD
301: RRCFIGRDKP AGVLVGHLEG VTFIDSRGDG RYFISNGKDQ TIKLWDIRKM SSSAPARHEV LRNYEWDYRW MDYPTEARDL KHPLDQSVST YKGHSVLRTL
401: IRCYFSPAHS TGQKYIYTGS NDSSVYIYDL VSGDKVAVLK HHSSPVRDCN WHPYYPTLIS SSWDGDLVKW EFPGSGEAPI MSKKRVRRRH FYY

Arabidopsis Description

Putative WD-repeat protein [Source:UniProtKB/TrEMBL;Acc:Q8LPI5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.