Factsheet for GSMUA_Achr10P12560_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67127	Canola	mitochondrion	15.77	73.79
GSMUA_Achr3P23760_001	Banana	cytosol	52.49	68.75
Os05t0407200-01	Rice	nucleus	62.66	65.23
TraesCS1D01G254400.1	Wheat	nucleus	61.2	64.41
TraesCS1A01G255000.1	Wheat	nucleus	61.0	64.19
HORVU1Hr1G060850.2	Barley	cytosol	42.32	64.15
VIT_07s0104g00900.t01	Wine grape	cytosol	64.52	63.99
TraesCS1B01G263400.2	Wheat	nucleus	60.79	63.83
CDY72277	Canola	cytosol, nucleus	25.93	63.78
CDX91264	Canola	cytosol	47.72	62.84
KXG21980	Sorghum	cytosol	59.75	62.61
Bra000849.1-P	Field mustard	nucleus	63.49	62.45
Zm00001d010305_P004	Maize	cytosol	59.54	62.39
Solyc06g008880.2.1	Tomato	nucleus	61.0	62.03
AT4G03020.1	Thale cress	nucleus	63.28	61.87
CDX90908	Canola	nucleus	62.86	61.71
CDY17974	Canola	nucleus	62.66	61.51
KRH20977	Soybean	cytosol	59.96	60.84
PGSC0003DMT400016081	Potato	nucleus	58.92	60.81
KRH31954	Soybean	cytosol	62.03	60.65
Solyc01g080690.2.1	Tomato	cytosol	58.51	60.13
Bra034178.1-P	Field mustard	cytosol	62.66	59.22
CDY22095	Canola	cytosol	62.03	58.63
KRH71501	Soybean	cytosol	40.46	56.85
KRH11292	Soybean	cytosol	59.54	52.95
CDY21934	Canola	plastid	62.45	31.55

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:DCAF11/LEC14B	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr10G12560_001	EnsemblPlants:GSMUA_Achr10P12560_001	EnsemblPlants:GSMUA_Achr10T12560_001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	UniProt:M0RHN2	PFAM:PF00400	PIRSF:PIRSF038135	PRINTS:PR00320	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19847	PANTHER:PTHR19847:SF15	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000294ECCF
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

LEC14B homolog [Source:GMGC_GENE;Acc:GSMUA_Achr10G12560_001]

Coordinates

chr10:-:21560130..21569893

Molecular Weight (calculated)

54571.0 Da

IEP (calculated)

7.460

GRAVY (calculated)

-0.478

Length

482 amino acids

Sequence
(BLAST)

001: MGYGMSRPDM DIDMHDTARG GDAARLRRGH GETFDVDNDI FYLTRLRSEP SARVRQGIDG RRTAPISTVR MLSGREANVS GRGRFSSADC SYVLGQYLPV
101: NGPWPVDRMD SRVYVSQFSE DGSLFVAAFQ GSRIRIYNVD KGWKVEKDIR ARSLRWTITD TSLSPDRRYL VYASMTPIVH IVNMGTAATE SHANITEIHE
201: GLDFSMHEDV ESIFGIFSIK FSSDGRELVA GSSDHSIYVY DLEANKLKSR FPAHSFDVNT VAFADETGNV IYSGSDDNLC KVWDRRCFVT ERQAAGVLTG
301: HLEGITFIDS HGDGRYFISN SKDQTIKLWD IRKMSSGTNC PKTRTSGWDY RYSQYPPQNK HLKHPNDMSV AAYRGHSVLR TLIRCYFSPS KSTGQKYIYT
401: GSHDTCVYIY DVVSGDHVAR LQCHQLTVRD CSWHPYYPLL VSSSWDGLIT RWEFPGNDAV HATNNNIRGG SIEDQMFRVM YL

Best Arabidopsis Sequence Match ( AT4G03020.1 )
(BLAST)

001: MFFGPSEFDA DEMGYAMSRL EIESDLCDTG KDVCGVGSSS GSHRSSEHLA DLDHEISQVT KLKSSPHQRY SREVPGRHQL PVSTVRMLAG RESNFSGRGR
101: FSAADCCHML SRYLPTKGPW LVDQMDSRAY VSQFSTDGSL FIAGFQGSRI RIYNVEKGWK VQKDILAKSL RWTVTDTSLS PDQRNLVYAS MSPIVHIVDV
201: GSGSTESHAN VTEIHDGLDF SSDEDGGYSF GIFSVKFSTD GREVVAGSSD DSIYVYDLEA NRVSLRTVAH TSDVNTVCFA DESGNLILSG SDDNLCKVWD
301: RRCFIGRDKP AGVLVGHLEG VTFIDSRGDG RYFISNGKDQ TIKLWDIRKM SSSAPARHEV LRNYEWDYRW MDYPTEARDL KHPLDQSVST YKGHSVLRTL
401: IRCYFSPAHS TGQKYIYTGS NDSSVYIYDL VSGDKVAVLK HHSSPVRDCN WHPYYPTLIS SSWDGDLVKW EFPGSGEAPI MSKKRVRRRH FYY

Arabidopsis Description

Putative WD-repeat protein [Source:UniProtKB/TrEMBL;Acc:Q8LPI5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.