CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67127	Canola	mitochondrion	17.65	84.47
KRH71501	Soybean	cytosol	55.78	80.17
VIT_07s0104g00900.t01	Wine grape	cytosol	75.05	76.13
CDY72277	Canola	cytosol, nucleus	29.61	74.49
AT4G03020.1	Thale cress	nucleus	73.02	73.02
Bra000849.1-P	Field mustard	nucleus	72.41	72.86
CDY17974	Canola	nucleus	72.41	72.71
CDX90908	Canola	nucleus	72.21	72.51
Bra034178.1-P	Field mustard	cytosol	73.83	71.37
CDY22095	Canola	cytosol	73.23	70.78
Solyc06g008880.2.1	Tomato	nucleus	67.55	70.25
CDX91264	Canola	cytosol	51.93	69.95
KRH20977	Soybean	cytosol	67.34	69.89
GSMUA_Achr3P23760_001	Banana	cytosol	50.3	67.39
PGSC0003DMT400016081	Potato	nucleus	61.87	65.31
Zm00001d010305_P004	Maize	cytosol	59.03	63.26
KXG21980	Sorghum	cytosol	59.03	63.26
Os05t0407200-01	Rice	nucleus	59.03	62.85
TraesCS1D01G254400.1	Wheat	nucleus	57.81	62.23
TraesCS1A01G255000.1	Wheat	nucleus	57.81	62.23
TraesCS1B01G263400.2	Wheat	nucleus	57.81	62.09
GSMUA_Achr10P...	Banana	cytosol	60.65	62.03
HORVU1Hr1G060850.2	Barley	cytosol	39.76	61.64
Os05t0144100-01	Rice	cytosol, nucleus	40.77	61.09
KRH11292	Soybean	cytosol	66.53	60.52
TraesCS1D01G088200.1	Wheat	nucleus	53.35	55.72
TraesCS1A01G086800.2	Wheat	nucleus	52.94	55.41
HORVU0Hr1G000250.10	Barley	cytosol	26.17	55.36
TraesCS1B01G105200.2	Wheat	mitochondrion, nucleus	52.94	55.3
TraesCS1B01G083400.1	Wheat	cytosol	52.54	55.11
TraesCS1A01G065300.2	Wheat	cytosol	52.33	54.89
TraesCS1D01G066000.1	Wheat	cytosol	52.13	54.68
HORVU1Hr1G018790.5	Barley	cytosol	53.14	52.4
KXG21285	Sorghum	cytosol, mitochondrion, nucleus	51.32	52.06
Zm00001d010892_P013	Maize	plastid	50.91	49.41
Os01t0383700-01	Rice	nucleus	10.14	41.67
CDY21934	Canola	plastid	74.24	38.36

Protein Annotations

EntrezGene:100815163	Gene3D:2.130.10.10	MapMan:35.1	EMBL:ACUP02006091	EMBL:BT094369	UniProt:C6TA39
InterPro:DCAF11/LEC14B	EnsemblPlantsGene:GLYMA_10G023000	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRH31954	ProteinID:KRH31954	ProteinID:KRH31954.1	PFAM:PF00400
PIRSF:PIRSF038135	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19847	PANTHER:PTHR19847:SF15	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI0001B15F2D	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf

Description

hypothetical protein

Coordinates

chr10:+:2002781..2009049

Molecular Weight (calculated)

55167.7 Da

IEP (calculated)

7.101

GRAVY (calculated)

-0.401

Length

493 amino acids

Sequence
(BLAST)

001: MYATASALYI DEMGYAMSRL EIESGLSEDG DAIQEDSSSG ETKRPLKNLD NEIAQITKLK STPHQQLVQV GTGRPELPVS PVKMLAGRES NYSGRGRFSS
101: ADRCHLLSRY LPVNGPWLID QMSSRAYVSQ FSADGSLFIA GFQGSHIRIY NVDRGWKVQK NILAKNLRWT ITDTSLSPDQ RYLVYASMSP IVHIVNAGSA
201: ETESLANVTE IHDGLDFSSN DDGGYSFGIF CVKFSKDGKE LVAGSSGDSI YVYDLEANKL SLRILAHTCD VNTVCFADET SHLIYSGSDD SFCKVWDRRC
301: LIAKGKPAGV LMGHLEGITF IDTRGDGRYF ISNGKDQTIK LWDIRKMSSN VTSNPGYRSY EWDYRWMDYP PQAKDLTHPC DQSVATYRGH SVLRTLIRCY
401: FSPAFSTGQK YIYTGSHNAC VYIYDLVSGA QVATLKHHKS PVRDCSWHPF HTTLVSSSWD GDVVKWEFAG SGDTPGSSTK KRVWTRHFYE HYL

Best Arabidopsis Sequence Match ( AT4G03020.1 )
(BLAST)

001: MFFGPSEFDA DEMGYAMSRL EIESDLCDTG KDVCGVGSSS GSHRSSEHLA DLDHEISQVT KLKSSPHQRY SREVPGRHQL PVSTVRMLAG RESNFSGRGR
101: FSAADCCHML SRYLPTKGPW LVDQMDSRAY VSQFSTDGSL FIAGFQGSRI RIYNVEKGWK VQKDILAKSL RWTVTDTSLS PDQRNLVYAS MSPIVHIVDV
201: GSGSTESHAN VTEIHDGLDF SSDEDGGYSF GIFSVKFSTD GREVVAGSSD DSIYVYDLEA NRVSLRTVAH TSDVNTVCFA DESGNLILSG SDDNLCKVWD
301: RRCFIGRDKP AGVLVGHLEG VTFIDSRGDG RYFISNGKDQ TIKLWDIRKM SSSAPARHEV LRNYEWDYRW MDYPTEARDL KHPLDQSVST YKGHSVLRTL
401: IRCYFSPAHS TGQKYIYTGS NDSSVYIYDL VSGDKVAVLK HHSSPVRDCN WHPYYPTLIS SSWDGDLVKW EFPGSGEAPI MSKKRVRRRH FYY

Arabidopsis Description

Putative WD-repeat protein [Source:UniProtKB/TrEMBL;Acc:Q8LPI5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.