Factsheet for Bra000849.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67127	Canola	mitochondrion	20.82	99.03
AT4G03020.1	Thale cress	nucleus	90.2	89.66
Bra034178.1-P	Field mustard	cytosol	88.37	84.9
VIT_07s0104g00900.t01	Wine grape	cytosol	74.08	74.69
KRH31954	Soybean	cytosol	72.86	72.41
Solyc06g008880.2.1	Tomato	nucleus	68.57	70.89
GSMUA_Achr3P23760_001	Banana	cytosol	51.02	67.93
PGSC0003DMT400016081	Potato	nucleus	63.27	66.38
HORVU1Hr1G060850.2	Barley	cytosol	41.22	63.52
GSMUA_Achr10P...	Banana	cytosol	62.45	63.49
Os05t0144100-01	Rice	cytosol, nucleus	42.04	62.61
TraesCS1D01G254400.1	Wheat	nucleus	58.37	62.45
TraesCS1A01G255000.1	Wheat	nucleus	58.37	62.45
KRH71501	Soybean	cytosol	43.47	62.1
TraesCS1B01G263400.2	Wheat	nucleus	57.96	61.87
Os05t0407200-01	Rice	nucleus	57.14	60.48
Zm00001d010305_P004	Maize	cytosol	56.53	60.22
KXG21980	Sorghum	cytosol	56.33	60.0
HORVU0Hr1G000250.10	Barley	cytosol	27.14	57.08
TraesCS1B01G083400.1	Wheat	cytosol	54.69	57.02
TraesCS1D01G066000.1	Wheat	cytosol	54.49	56.81
TraesCS1A01G065300.2	Wheat	cytosol	54.08	56.38
TraesCS1D01G088200.1	Wheat	nucleus	54.29	56.36
TraesCS1A01G086800.2	Wheat	nucleus	53.88	56.05
TraesCS1B01G105200.2	Wheat	mitochondrion, nucleus	53.47	55.51
HORVU1Hr1G018790.5	Barley	cytosol	54.29	53.2
KXG21285	Sorghum	cytosol, mitochondrion, nucleus	52.24	52.67
Zm00001d010892_P013	Maize	plastid	52.45	50.59
Os01t0383700-01	Rice	nucleus	10.2	41.67

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlantsGene:Bra000849	EnsemblPlants:Bra000849.1	EnsemblPlants:Bra000849.1-P	InterPro:DCAF11/LEC14B
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	UniProt:M4C9H0	PFAM:PF00400	PIRSF:PIRSF038135	PRINTS:PR00320	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19847	PANTHER:PTHR19847:SF15	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000254053B
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

AT4G03020 (E=3e-261) | transducin family protein / WD-40 repeat family protein

Coordinates

chrA03:+:13490714..13493094

Molecular Weight (calculated)

55006.2 Da

IEP (calculated)

6.885

GRAVY (calculated)

-0.501

Length

490 amino acids

Sequence
(BLAST)

001: MFFGPSEFDV DDMGYAMSRL ETESDAGRDF SGVGSSSSGS HISSEHLDHD DINQITKLKS SPHQRYSRVV PGRHELPVST VRMLAGRESN FSGRGGRFSA
101: ADCCHMLSRY LPVKGPWLVD QMNSRAYVSQ FSTDGSLFIA GFQGSHIRIY NVEKGWKVQK DILAKSLRWT VTDTSLSPDQ RNLVYASMSP MVHIVDVGSG
201: TTESHANVTE IHDGLDFSSD EDGGYSFGIF SVKFSTDGRE LVAGSSDESI YVYDLEANKV SLRTVAHTSD VNTVCFADES GNLILSGGDD NLCKVWDRRC
301: FIGRDKAAGV LVGHLEGVTF IDSRGDGRYF ISNGKDQTIK LWDIRKMSST PPAKHDVIRN YEWDYRWMEY PPEARDLKHP FDQSVATYKG HSVLRTLIRC
401: YFSPSHSTGQ KYIYTGSNDS SVYIYDLVSG DKVAVLKHHS SPVRDCNWHP HYPTLISSSW DGDLVKWEFP GRGEAPITSK KRVRRRHLYY

Best Arabidopsis Sequence Match ( AT4G03020.1 )
(BLAST)

001: MFFGPSEFDA DEMGYAMSRL EIESDLCDTG KDVCGVGSSS GSHRSSEHLA DLDHEISQVT KLKSSPHQRY SREVPGRHQL PVSTVRMLAG RESNFSGRGR
101: FSAADCCHML SRYLPTKGPW LVDQMDSRAY VSQFSTDGSL FIAGFQGSRI RIYNVEKGWK VQKDILAKSL RWTVTDTSLS PDQRNLVYAS MSPIVHIVDV
201: GSGSTESHAN VTEIHDGLDF SSDEDGGYSF GIFSVKFSTD GREVVAGSSD DSIYVYDLEA NRVSLRTVAH TSDVNTVCFA DESGNLILSG SDDNLCKVWD
301: RRCFIGRDKP AGVLVGHLEG VTFIDSRGDG RYFISNGKDQ TIKLWDIRKM SSSAPARHEV LRNYEWDYRW MDYPTEARDL KHPLDQSVST YKGHSVLRTL
401: IRCYFSPAHS TGQKYIYTGS NDSSVYIYDL VSGDKVAVLK HHSSPVRDCN WHPYYPTLIS SSWDGDLVKW EFPGSGEAPI MSKKRVRRRH FYY

Arabidopsis Description

Putative WD-repeat protein [Source:UniProtKB/TrEMBL;Acc:Q8LPI5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.