Factsheet for Os05t0407200-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G060850.2	Barley	cytosol	57.67	83.96
TraesCS1B01G263400.2	Wheat	nucleus	82.51	83.22
TraesCS1A01G255000.1	Wheat	nucleus	80.78	81.66
TraesCS1D01G254400.1	Wheat	nucleus	80.56	81.44
Zm00001d010305_P004	Maize	cytosol	78.4	78.91
KXG21980	Sorghum	cytosol	78.4	78.91
CDY67127	Canola	mitochondrion	15.12	67.96
GSMUA_Achr10P...	Banana	cytosol	65.23	62.66
VIT_07s0104g00900.t01	Wine grape	cytosol	63.28	60.29
CDX91264	Canola	cytosol	47.08	59.56
PGSC0003DMT400016081	Potato	nucleus	60.04	59.53
Solyc06g008880.2.1	Tomato	nucleus	60.91	59.49
KRH31954	Soybean	cytosol	62.85	59.03
KRH20977	Soybean	cytosol	60.48	58.95
Solyc01g080690.2.1	Tomato	cytosol	59.61	58.85
Os05t0144100-01	Rice	cytosol, nucleus	41.68	58.66
CDY72277	Canola	cytosol, nucleus	24.62	58.16
Bra000849.1-P	Field mustard	nucleus	60.48	57.14
AT4G03020.1	Thale cress	nucleus	60.69	57.0
CDY17974	Canola	nucleus	60.04	56.62
CDX90908	Canola	nucleus	60.04	56.62
Bra034178.1-P	Field mustard	cytosol	61.56	55.88
CDY22095	Canola	cytosol	60.91	55.29
KRH71501	Soybean	cytosol	39.52	53.35
KRH11292	Soybean	cytosol	60.48	51.66
Os01t0383700-01	Rice	nucleus	11.02	42.5
CDY21934	Canola	plastid	61.34	29.77

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EntrezGene:4338763	ProteinID:AAT38033.1	ProteinID:AAV59433.1	EMBL:AK072186
ProteinID:BAF17433.1	ProteinID:BAS93966.1	InterPro:DCAF11/LEC14B	ProteinID:EEE63693.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlantsGene:Os05g0407200
EnsemblPlants:Os05t0407200-01	PFAM:PF00400	PIRSF:PIRSF038135	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19847	PANTHER:PTHR19847:SF15	UniProt:Q6L548	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0000351DC3
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_015640279.1	SEG:seg

Description

OsWD40-119WD repeat protein 23 domain containing protein. (Os05t0407200-01);Non-protein coding transcript. (Os05t0407200-02)

Coordinates

chr5:-:19838548..19846592

Molecular Weight (calculated)

52262.5 Da

IEP (calculated)

6.425

GRAVY (calculated)

-0.553

Length

463 amino acids

Sequence
(BLAST)

001: MGYGMSRMEE EYSEHEDQNN GGSNSQVNNE FLNTHNDIFH MTQIRSGPSE SLRKSIGTSK DVISTTRLLS GREINSSGNG KFSSVDRAFL LGRYLPVDGP
101: EIVDRMDSRA YVSQFSADGS LFVAGFQGSH IRIYDVDKGW KVHRDIHARS LRWTISDASL SPDQQFLVYS SLAPIIHIVN VGTAAKQSYA NITDIHDGLD
201: FSQHEDVRYT FGIFSVKFSS DGRELVAGSN DDSIYVYDLV ANKLTLRLPA HHSDVNTVAF ADETGHLIYS GSDDNLCKVW DRRCLSTEEP AGVLTGHLHG
301: ITHIDSRGDG RCFISNGKDQ AIKMWDIRKM TSNADSYEDR TSNWDYRYSR YPQQYKQLKH PHDQSIATYW GHSVLRTLIR CYFSPAYSTG QKYIYTGSYD
401: SSVCIYDVVS GSQVAKLKGY HQLAIRDCSW HPFDPMLVSS SWDGRVAKWS RSSCQQEETT DLD

Best Arabidopsis Sequence Match ( AT4G03020.1 )
(BLAST)

001: MFFGPSEFDA DEMGYAMSRL EIESDLCDTG KDVCGVGSSS GSHRSSEHLA DLDHEISQVT KLKSSPHQRY SREVPGRHQL PVSTVRMLAG RESNFSGRGR
101: FSAADCCHML SRYLPTKGPW LVDQMDSRAY VSQFSTDGSL FIAGFQGSRI RIYNVEKGWK VQKDILAKSL RWTVTDTSLS PDQRNLVYAS MSPIVHIVDV
201: GSGSTESHAN VTEIHDGLDF SSDEDGGYSF GIFSVKFSTD GREVVAGSSD DSIYVYDLEA NRVSLRTVAH TSDVNTVCFA DESGNLILSG SDDNLCKVWD
301: RRCFIGRDKP AGVLVGHLEG VTFIDSRGDG RYFISNGKDQ TIKLWDIRKM SSSAPARHEV LRNYEWDYRW MDYPTEARDL KHPLDQSVST YKGHSVLRTL
401: IRCYFSPAHS TGQKYIYTGS NDSSVYIYDL VSGDKVAVLK HHSSPVRDCN WHPYYPTLIS SSWDGDLVKW EFPGSGEAPI MSKKRVRRRH FYY

Arabidopsis Description

Putative WD-repeat protein [Source:UniProtKB/TrEMBL;Acc:Q8LPI5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.