CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010305_P004	Maize	cytosol	93.26	93.26
Os05t0407200-01	Rice	nucleus	78.91	78.4
HORVU1Hr1G060850.2	Barley	cytosol	52.83	76.42
TraesCS1B01G263400.2	Wheat	nucleus	76.09	76.25
TraesCS1A01G255000.1	Wheat	nucleus	73.91	74.24
TraesCS1D01G254400.1	Wheat	nucleus	73.48	73.8
GSMUA_Achr10P...	Banana	cytosol	62.61	59.75
CDX91264	Canola	cytosol	47.17	59.29
KRH31954	Soybean	cytosol	63.26	59.03
VIT_07s0104g00900.t01	Wine grape	cytosol	62.17	58.85
CDY72277	Canola	cytosol, nucleus	25.0	58.67
CDY67127	Canola	mitochondrion	13.04	58.25
KRH20977	Soybean	cytosol	59.13	57.26
PGSC0003DMT400016081	Potato	nucleus	58.04	57.17
Solyc06g008880.2.1	Tomato	nucleus	58.91	57.17
Bra000849.1-P	Field mustard	nucleus	60.0	56.33
Solyc01g080690.2.1	Tomato	cytosol	57.39	56.29
AT4G03020.1	Thale cress	nucleus	60.0	55.98
CDY17974	Canola	nucleus	59.57	55.8
CDX90908	Canola	nucleus	59.57	55.8
KRH71501	Soybean	cytosol	40.87	54.81
Bra034178.1-P	Field mustard	cytosol	60.0	54.12
CDY22095	Canola	cytosol	59.35	53.53
KXG21285	Sorghum	cytosol, mitochondrion, nucleus	53.91	51.03
KRH11292	Soybean	cytosol	58.91	50.0
CDY21934	Canola	plastid	60.22	29.04

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A1B6P891	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KXG21980	ProteinID:KXG21980
ProteinID:KXG21980.1	ProteinID:KXG21981.1	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19847	PANTHER:PTHR19847:SF15	SMART:SM00320	EnsemblPlantsGene:SORBI_3009G134500	SUPFAM:SSF50978	UniParc:UPI00081AB56F
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:

Description

hypothetical protein

Coordinates

chr9:-:48934746..48943164

Molecular Weight (calculated)

51719.1 Da

IEP (calculated)

6.761

GRAVY (calculated)

-0.505

Length

460 amino acids

Sequence
(BLAST)

001: MGYGMSRLED EYYEPEGQNT DGSGSVQVNN EFAELHNDIF HMTRMRSRLT ESYKSMGTNR GIISTAKLLS QREIDCSGKR MFSSGDRAFV LGRYVPMNGP
101: QLLDRMDSRA YVSQFSADGT LFVAGFQGSH IRIYDADRGW SIHKDIHARC LRWTISDVSL SPDQRYLAYS SLAPIVHIVN VGNAARESYA NVTDIHDGLD
201: FSQHEDVQYS FGIFSVKFSS DGRELVAGSN DESIYVYDLH ANKLTLRLPA HTSDVNTVAF ADETGHLIYS GSDDTLCKVW DRRCLSTGQA AGVLTGHLHG
301: VTHIDSRGDG RSFISNGKDQ AIKLWDVRKM TSNADSCADG APSWDYRYSR YPQQHKQLKH PHDQSLATYR GHAVLRTLIR CYFSPAYSTG QKYIYTGSYD
401: SCVYIYDVVS GSQVAKLKWH QMAIRDCSWH PFEPTLVSSS WDGQVAKWTS ARDQQASDID

Best Arabidopsis Sequence Match ( AT4G03020.1 )
(BLAST)

001: MFFGPSEFDA DEMGYAMSRL EIESDLCDTG KDVCGVGSSS GSHRSSEHLA DLDHEISQVT KLKSSPHQRY SREVPGRHQL PVSTVRMLAG RESNFSGRGR
101: FSAADCCHML SRYLPTKGPW LVDQMDSRAY VSQFSTDGSL FIAGFQGSRI RIYNVEKGWK VQKDILAKSL RWTVTDTSLS PDQRNLVYAS MSPIVHIVDV
201: GSGSTESHAN VTEIHDGLDF SSDEDGGYSF GIFSVKFSTD GREVVAGSSD DSIYVYDLEA NRVSLRTVAH TSDVNTVCFA DESGNLILSG SDDNLCKVWD
301: RRCFIGRDKP AGVLVGHLEG VTFIDSRGDG RYFISNGKDQ TIKLWDIRKM SSSAPARHEV LRNYEWDYRW MDYPTEARDL KHPLDQSVST YKGHSVLRTL
401: IRCYFSPAHS TGQKYIYTGS NDSSVYIYDL VSGDKVAVLK HHSSPVRDCN WHPYYPTLIS SSWDGDLVKW EFPGSGEAPI MSKKRVRRRH FYY

Arabidopsis Description

Putative WD-repeat protein [Source:UniProtKB/TrEMBL;Acc:Q8LPI5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.