Factsheet for TraesCS1D01G254400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G255000.1	Wheat	nucleus	99.13	99.13
TraesCS1B01G263400.2	Wheat	nucleus	96.07	95.86
HORVU1Hr1G060850.2	Barley	cytosol	62.88	90.57
Os05t0407200-01	Rice	nucleus	81.44	80.56
Zm00001d010305_P004	Maize	cytosol	74.24	73.91
KXG21980	Sorghum	cytosol	73.8	73.48
CDY67127	Canola	mitochondrion	14.85	66.02
GSMUA_Achr10P...	Banana	cytosol	64.41	61.2
CDX91264	Canola	cytosol	47.82	59.84
VIT_07s0104g00900.t01	Wine grape	cytosol	62.45	58.85
Bra000849.1-P	Field mustard	nucleus	62.45	58.37
Solyc06g008880.2.1	Tomato	nucleus	60.26	58.23
KRH20977	Soybean	cytosol	60.26	58.11
PGSC0003DMT400016081	Potato	nucleus	58.95	57.82
KRH31954	Soybean	cytosol	62.23	57.81
AT4G03020.1	Thale cress	nucleus	62.23	57.81
CDY72277	Canola	cytosol, nucleus	24.67	57.65
CDY17974	Canola	nucleus	61.79	57.64
CDX90908	Canola	nucleus	61.79	57.64
TraesCS1D01G088200.1	Wheat	nucleus	58.95	57.2
Solyc01g080690.2.1	Tomato	cytosol	58.3	56.93
Bra034178.1-P	Field mustard	cytosol	62.66	56.27
CDY22095	Canola	cytosol	62.01	55.69
TraesCS1D01G066000.1	Wheat	cytosol	54.37	52.98
KRH71501	Soybean	cytosol	38.86	51.9
KRH11292	Soybean	cytosol	59.61	50.37
CDY21934	Canola	plastid	62.45	29.98

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:DCAF11/LEC14B	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PIRSF:PIRSF038135
PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19847	PANTHER:PTHR19847:SF15	SMART:SM00320
SUPFAM:SSF50978	EnsemblPlantsGene:TraesCS1D01G254400	EnsemblPlants:TraesCS1D01G254400.1	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	:	:	:	:	:

Description

No Description!

Coordinates

chr1D:-:346394076..346400441

Molecular Weight (calculated)

51177.3 Da

IEP (calculated)

6.856

GRAVY (calculated)

-0.554

Length

458 amino acids

Sequence
(BLAST)

001: MGYGMSRLQG SSEPEGQNSD GSSSVEVKND FSKLHNDIFH MTRLRSGPSE SIRKSMDRVS VTRLLRGREV NSSGNGKFSP VDRAFVLGHY LPVDGPETVD
101: TMDSRAYVSQ FSADGSLFVA GFQGSHIRIY DVDKGWEIHK DIHARSLRWT ISDAALSPDQ RFLVYSSLAP IIHIVNVGTA SKESYANVTD IHDGLDFSEH
201: EDVRYSFGLF SVKFSTDGRE LVAGSNDDSI YVYDLQANKV TLRLPAHTSD VNTVAFADES GNLLYSGSDD NLCKVWDRRC LSTGEAAGVL TGHLHGITHI
301: DSRGDGRCFI SNGKDQAIKM WDIRKMTSNA DGSENRVPAW DYRYSRYPQQ YKQQKHPHDQ SVATYRGHSV LRTLIRCYFS PTYSTGQKYI YTGSYDASVC
401: IYDVVSGSQV AKLQGHHHLA VRDCSWHPSD PMLVSSSWDG QIARWSRTRS KQDTCESD

Best Arabidopsis Sequence Match ( AT4G03020.1 )
(BLAST)

001: MFFGPSEFDA DEMGYAMSRL EIESDLCDTG KDVCGVGSSS GSHRSSEHLA DLDHEISQVT KLKSSPHQRY SREVPGRHQL PVSTVRMLAG RESNFSGRGR
101: FSAADCCHML SRYLPTKGPW LVDQMDSRAY VSQFSTDGSL FIAGFQGSRI RIYNVEKGWK VQKDILAKSL RWTVTDTSLS PDQRNLVYAS MSPIVHIVDV
201: GSGSTESHAN VTEIHDGLDF SSDEDGGYSF GIFSVKFSTD GREVVAGSSD DSIYVYDLEA NRVSLRTVAH TSDVNTVCFA DESGNLILSG SDDNLCKVWD
301: RRCFIGRDKP AGVLVGHLEG VTFIDSRGDG RYFISNGKDQ TIKLWDIRKM SSSAPARHEV LRNYEWDYRW MDYPTEARDL KHPLDQSVST YKGHSVLRTL
401: IRCYFSPAHS TGQKYIYTGS NDSSVYIYDL VSGDKVAVLK HHSSPVRDCN WHPYYPTLIS SSWDGDLVKW EFPGSGEAPI MSKKRVRRRH FYY

Arabidopsis Description

Putative WD-repeat protein [Source:UniProtKB/TrEMBL;Acc:Q8LPI5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.