Factsheet for PGSC0003DMT400016081

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g080690.2.1	Tomato	cytosol	95.72	95.31
CDY67127	Canola	mitochondrion	16.92	76.7
CDY72277	Canola	cytosol, nucleus	28.05	66.84
GSMUA_Achr3P23760_001	Banana	cytosol	52.46	66.58
VIT_07s0104g00900.t01	Wine grape	cytosol	69.16	66.46
KRH20977	Soybean	cytosol	66.6	65.47
CDX91264	Canola	cytosol	50.54	64.48
AT4G03020.1	Thale cress	nucleus	67.45	63.89
CDY17974	Canola	nucleus	66.6	63.34
Bra000849.1-P	Field mustard	nucleus	66.38	63.27
CDX90908	Canola	nucleus	66.38	63.14
KRH31954	Soybean	cytosol	65.31	61.87
Bra034178.1-P	Field mustard	cytosol	67.24	61.57
Os05t0144100-01	Rice	cytosol, nucleus	43.25	61.4
CDY22095	Canola	cytosol	67.02	61.37
Os05t0407200-01	Rice	nucleus	59.53	60.04
TraesCS1D01G254400.1	Wheat	nucleus	57.82	58.95
GSMUA_Achr10P...	Banana	cytosol	60.81	58.92
TraesCS1A01G255000.1	Wheat	nucleus	57.6	58.73
TraesCS1B01G263400.2	Wheat	nucleus	57.17	58.17
KXG21980	Sorghum	cytosol	57.17	58.04
KRH71501	Soybean	cytosol	42.18	57.43
Zm00001d010305_P004	Maize	cytosol	56.32	57.17
KRH11292	Soybean	cytosol	66.17	57.01
HORVU1Hr1G060850.2	Barley	cytosol	38.54	56.6
TraesCS1D01G088200.1	Wheat	nucleus	57.17	56.57
TraesCS1B01G105200.2	Wheat	mitochondrion, nucleus	56.96	56.36
TraesCS1A01G086800.2	Wheat	nucleus	56.32	55.84
HORVU1Hr1G018790.5	Barley	cytosol	57.39	53.6
TraesCS1B01G083400.1	Wheat	cytosol	53.53	53.19
TraesCS1D01G066000.1	Wheat	cytosol	53.1	52.77
TraesCS1A01G065300.2	Wheat	cytosol	52.89	52.55
HORVU0Hr1G000250.10	Barley	cytosol	25.27	50.64
KXG21285	Sorghum	cytosol, mitochondrion, nucleus	52.46	50.41
Zm00001d010892_P013	Maize	plastid	52.89	48.62
Os01t0383700-01	Rice	nucleus	10.06	39.17
CDY21934	Canola	plastid	67.45	33.02

Protein Annotations

EntrezGene:102596469	Gene3D:2.130.10.10	MapMan:35.1	InterPro:DCAF11/LEC14B	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M1A726
PFAM:PF00400	EnsemblPlantsGene:PGSC0003DMG400006286	PGSC:PGSC0003DMG400006286	EnsemblPlants:PGSC0003DMT400016081	PIRSF:PIRSF038135	PRINTS:PR00320
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19847	PANTHER:PTHR19847:SF15	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI000294B63A	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_015168715.1
SEG:seg	:	:	:	:	:

Description

WD-repeat protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006286]

Coordinates

chr1:+:60572745..60579914

Molecular Weight (calculated)

52870.1 Da

IEP (calculated)

8.499

GRAVY (calculated)

-0.533

Length

467 amino acids

Sequence
(BLAST)

001: MSRSRRFLNE RARGDGMKLI DERGGTSVLD HEISQLTKIR SNPHERMRHL LPGKGKEPVS SVKMLAAREG NYTGRGRFSS SDCCHLLSRY LPTNGPSVVD
101: QMRSCTYVSQ FSTDGSLFVA GFQESHIRIY NVDQGWKIQK DIRAKSLRWT ITDTSLSPDQ RFLVYSSISP IVHIVDVGSG MKQSVANVTE IHEGLEFSSP
201: TYDYDNYTFG IFSVKFSTDG RELVAGSSDS SIYVYDLEAK RLSLQIPAHT SDVNAVCFAD ETGHLIYSGS DDSLCKVWDR RCFGTREQAA GVLIGHLEGI
301: TYVDTRGDGR YLISNGKDQA IKLWDIRKMS SNINYSPRPR SYDWDYRWMD YPEHVRNKRN PHDLSLATYK GHSVLRTLIR CYFSPAHSTG QKFIYTGSSD
401: SSVYIYDVVS GAQVAKLDYH QEPVRDCNWH PYYPTLVSSG WDGIIAKWEF SGTDTSPLPK KLPSRRS

Best Arabidopsis Sequence Match ( AT4G03020.1 )
(BLAST)

001: MFFGPSEFDA DEMGYAMSRL EIESDLCDTG KDVCGVGSSS GSHRSSEHLA DLDHEISQVT KLKSSPHQRY SREVPGRHQL PVSTVRMLAG RESNFSGRGR
101: FSAADCCHML SRYLPTKGPW LVDQMDSRAY VSQFSTDGSL FIAGFQGSRI RIYNVEKGWK VQKDILAKSL RWTVTDTSLS PDQRNLVYAS MSPIVHIVDV
201: GSGSTESHAN VTEIHDGLDF SSDEDGGYSF GIFSVKFSTD GREVVAGSSD DSIYVYDLEA NRVSLRTVAH TSDVNTVCFA DESGNLILSG SDDNLCKVWD
301: RRCFIGRDKP AGVLVGHLEG VTFIDSRGDG RYFISNGKDQ TIKLWDIRKM SSSAPARHEV LRNYEWDYRW MDYPTEARDL KHPLDQSVST YKGHSVLRTL
401: IRCYFSPAHS TGQKYIYTGS NDSSVYIYDL VSGDKVAVLK HHSSPVRDCN WHPYYPTLIS SSWDGDLVKW EFPGSGEAPI MSKKRVRRRH FYY

Arabidopsis Description

Putative WD-repeat protein [Source:UniProtKB/TrEMBL;Acc:Q8LPI5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.